Endoplasmic reticulum/Sarcoplasmic reticulum receptors

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 2: Line 2:
===Ligand-gated Calcium channels===
===Ligand-gated Calcium channels===
====[[Inositol 1,4,5-Trisphosphate Receptor]]====
====[[Inositol 1,4,5-Trisphosphate Receptor]]====
-
The specific type of inositol 1,4,5-trisphosphate receptor (InsP<sub>3</sub>R) protein discussed here is the mouse type 1 InsP<sub>3</sub>R, also called InsP<sub>3</sub>R1. This polypeptide contains three major regions: the <scene name='38/382942/N_terminal_domain/1'>amino terminal</scene> inositol 1,4,5-trisphosphate (InsP<sub>3</sub>) binding region, the central modulatory region, and the <scene name='38/382942/C_terminal_domain/1'>carboxy-terminus channel region</scene>.<ref name="mainpaper"/> The protein forms an L-shaped structure composed of two asymmetric domains perpendicular to each other.<ref name="mainpaper"/> The N-terminal domain is made up of 12 β-strands and 2 single-turn helices, which come together to form a barrel.<ref name="mainpaper"/> The C-terminal end is quite different, consisting of a bundle made of eight α-helices.<ref name="mainpaper"/> The interface of the two domains is lined with basic residues and forms the <scene name='38/382942/Ip3_binding_pocket/1'>receptor site</scene> for InsP<sub>3</sub>.<ref name="mainpaper"/> The InsP<sub>3</sub>R protein does not belong to a superfamily of proteins. The receptor is thought to span the membrane 6 times, leaving the C-terminus in the cytoplasm.<ref name="functionref"/>
+
The specific type of inositol 1,4,5-trisphosphate receptor (InsP<sub>3</sub>R) protein discussed here is the mouse type 1 InsP<sub>3</sub>R, also called InsP<sub>3</sub>R1. This polypeptide contains three major regions: the <scene name='38/382942/N_terminal_domain/1'>amino terminal</scene> inositol 1,4,5-trisphosphate (InsP<sub>3</sub>) binding region, the central modulatory region, and the <scene name='38/382942/C_terminal_domain/1'>carboxy-terminus channel region</scene>. The protein forms an L-shaped structure composed of two asymmetric domains perpendicular to each other. The N-terminal domain is made up of 12 β-strands and 2 single-turn helices, which come together to form a barrel. The C-terminal end is quite different, consisting of a bundle made of eight α-helices. The interface of the two domains is lined with basic residues and forms the <scene name='38/382942/Ip3_binding_pocket/1'>receptor site</scene> for InsP<sub>3</sub>. The InsP<sub>3</sub>R protein does not belong to a superfamily of proteins. The receptor is thought to span the membrane 6 times, leaving the C-terminus in the cytoplasm.
 +
 
 +
The InsP<sub>3</sub> <scene name='Sandbox_170/1n4k/8'>ligand</scene> sits between the two domains of the protein. Highly <scene name='38/382942/Ip3_binding_pocket/1'>basic amino acid residues</scene> are present on both domains and are responsible for the binding of InsP<sub>3</sub> to InsP<sub>3</sub>R.<ref name="mainpaper"/> Since the InsP<sub>3</sub> ligand is highly charged, it is very likely to interact with the positively charged amino acids present in the N-terminus InsP<sub>3</sub>-binding domain.<ref name="functionref"/> In binding, water molecules are involved in hydrogen bonding between InsP<sub>3</sub> and its receptor as well as interactions between protein side chains and phosphorous.<ref name="mainpaper"/> <scene name='38/382942/Cv/4'>Active site</scene> (water molecules shown as red spheres). Coordination of phosphorous groups is mediated by residues in both the β-domain and α-domain. The hydroxyl groups of InsP<sub>3</sub> play a small role in binding to InsP<sub>3</sub>.<ref name="mainpaper"/> Additionally, 9 out of 12 Arg/Lys residues play a very important role in ligand binding and salt bridges to stabilize between the domain regions.<ref name="mainpaper"/> The non-basic residues T266, T267, G268, and Y567 are also integral in InsP<sub>3</sub> coordination: if T267, G268 or Y567 residues are mutated then there will be a significant reduction in ligand binding.<ref name="mainpaper"/> In all likelihood, the InsP<sub>3</sub>-binding site has been found to be made up of multiple sequences present throughout the N-terminal area of the protein.<ref name="functionref"/> This makes the tertiary structure of the protein and proper folding absolutely integral to the function: if the protein does not fold correctly, then the multiple sequences of the protein making up the binding region cannot come together to be at all functional in binding the InsP<sub>3</sub> ligand.
====[[Ryanodine receptor]]====
====[[Ryanodine receptor]]====

Revision as of 12:38, 24 May 2021

Mouse inositol triphosphate receptor ligand-binding core complex with its ligand inositol triphosphate (PDB entry 1n4k)

Drag the structure with the mouse to rotate

References

  1. Cite error: Invalid <ref> tag; no text was provided for refs named mainpaper
  2. Cite error: Invalid <ref> tag; no text was provided for refs named functionref

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky

Personal tools