7c8n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of IscU H106A variant==
==Crystal structure of IscU H106A variant==
-
<StructureSection load='7c8n' size='340' side='right'caption='[[7c8n]]' scene=''>
+
<StructureSection load='7c8n' size='340' side='right'caption='[[7c8n]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7C8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7C8N FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7c8n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"methanothrix_thermoacetophila"_nozhevnikova_and_chudina_1984 "methanothrix thermoacetophila" nozhevnikova and chudina 1984]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7C8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7C8N FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7c8n OCA], [https://pdbe.org/7c8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7c8n RCSB], [https://www.ebi.ac.uk/pdbsum/7c8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7c8n ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7c8n OCA], [https://pdbe.org/7c8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7c8n RCSB], [https://www.ebi.ac.uk/pdbsum/7c8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7c8n ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
IscU serves as a scaffold for the de novo assembly of a [2Fe-2S] cluster prior to its delivery to recipient protein. It has also been proposed that on one dimer of bacterial IscU, two [2Fe-2S] clusters can be converted into a single [4Fe-4S] cluster. However, lack of structural information about the dimeric state of IscU has hindered our understanding of the underlying mechanisms. In this study, we determine the X-ray crystal structure of IscU from the thermophilic archaeon Methanothrix thermoacetophila and demonstrate a dimer structure of IscU in which two [2Fe-2S] clusters are facing each other in close proximity at the dimer interface. Our structure also reveals for the first time that Asp40 serves as a fourth ligand to the [2Fe-2S] cluster with three Cys ligands in each monomer, consistent with previous spectroscopic data. We confirm by EPR spectroscopic analysis that in solution two adjacent [2Fe-2S] clusters in the wild-type dimer are converted to a [4Fe-4S] cluster via reductive coupling. Furthermore, we find that the H106A substitution abolishes the reductive conversion to the [4Fe-4S] cluster without structural alteration, suggesting that His106 is functionally involved in this process. Overall, these findings provide a structural explanation for the assembly and conversion of Fe-S clusters on IscU and highlight a dynamic process that advances via association and dissociation of the IscU dimer.
 +
 +
The Structure of the Dimeric State of IscU Harboring Two Adjacent [2Fe-2S] Clusters Provides Mechanistic Insights into Cluster Conversion to [4Fe-4S].,Kunichika K, Nakamura R, Fujishiro T, Takahashi Y Biochemistry. 2021 May 25;60(20):1569-1572. doi: 10.1021/acs.biochem.1c00112., Epub 2021 May 3. PMID:33938220<ref>PMID:33938220</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7c8n" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Methanothrix thermoacetophila nozhevnikova and chudina 1984]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Fujishiro T]]
+
[[Category: Fujishiro, T]]
-
[[Category: Kunichika K]]
+
[[Category: Kunichika, K]]
-
[[Category: Takahashi Y]]
+
[[Category: Takahashi, Y]]
 +
[[Category: Biosynthetic protein]]
 +
[[Category: Iron-sulfur cluster biogenesis]]

Revision as of 12:31, 9 June 2021

Crystal structure of IscU H106A variant

PDB ID 7c8n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools