2n3b

From Proteopedia

(Difference between revisions)

Revision as of 08:15, 8 March 2023

Structure of oxidized horse heart cytochrome c encapsulated in reverse micelles

Structural highlights

2n3b is a 1 chain structure with sequence from Equus caballus. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CYC_HORSE Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases (By similarity).

Publication Abstract from PubMed

The interaction between cytochrome c and the anionic lipid cardiolipin has been proposed as a primary event in the apoptotic signaling cascade. Numerous studies that have examined the interaction of cytochrome c with cardiolipin embedded in a variety of model phospholipid membranes have suggested that partial unfolding of the protein is a precursor to the apoptotic response. However, these studies lacked site resolution and used model systems with negligible or a positive membrane curvature, which is distinct from the large negative curvature of the invaginations of the inner mitochondrial membrane where cytochrome c resides. We have used reverse micelle encapsulation to mimic the potential effects of confinement on the interaction of cytochrome c with cardiolipin. Encapsulation of oxidized horse cytochrome c in 1-decanoyl-rac-glycerol/lauryldimethylamine-N-oxide/hexanol reverse micelles prepared in pentane yields NMR spectra essentially identical to the protein in free aqueous solution. The structure of encapsulated ferricytochrome c was determined to high precision (<r.m.s.d.>bb ~ 0.23 A) using NMR-based methods and is closely similar to the cryogenic crystal structure (<r.m.s.d.>bb ~ 1.2 A). Incorporation of cardiolipin into the reverse micelle surfactant shell causes localized chemical shift perturbations of the encapsulated protein, providing the first view of the cardiolipin/cytochrome c interaction interface at atomic resolution. Three distinct sites of interaction are detected: the so-called A- and L-sites, plus a previously undocumented interaction centered on residues Phe36, Gly37, Thr58, Trp59, and Lys60. Importantly, in distinct contrast to earlier studies of this interaction, the protein is not significantly disturbed by the binding of cardiolipin in the context of the reverse micelle.

Defining the apoptotic trigger: the interaction of cytochrome c and cardiolipin.,O'Brien ES, Nucci NV, Fuglestad B, Tommos C, Wand AJ J Biol Chem. 2015 Oct 20. pii: jbc.M115.689406. PMID:26487716^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ O'Brien ES, Nucci NV, Fuglestad B, Tommos C, Wand AJ. Defining the apoptotic trigger: the interaction of cytochrome c and cardiolipin. J Biol Chem. 2015 Oct 20. pii: jbc.M115.689406. PMID:26487716 doi:http://dx.doi.org/10.1074/jbc.M115.689406

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2n3b"

@@ Line 1: / Line 1: @@
 ==Structure of oxidized horse heart cytochrome c encapsulated in reverse micelles==
-<StructureSection load='2n3b' size='340' side='right'caption='[[2n3b]], [[NMR_Ensembles_of_Models | 32 NMR models]]' scene=''>
+<StructureSection load='2n3b' size='340' side='right'caption='[[2n3b]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2n3b]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N3B FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2n3b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N3B FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ocd|1ocd]]</div></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2n3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2n3b OCA], [https://pdbe.org/2n3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2n3b RCSB], [https://www.ebi.ac.uk/pdbsum/2n3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2n3b ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/CYC_HORSE CYC_HORSE]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.  Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases (By similarity).
+[https://www.uniprot.org/uniprot/CYC_HORSE CYC_HORSE] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.  Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases (By similarity).
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 22: @@
 __TOC__
 </StructureSection>
+[[Category: Equus caballus]]
 [[Category: Large Structures]]
-[[Category: Brien, E S.O]]
+[[Category: Fuglestad B]]
-[[Category: Fuglestad, B]]
+[[Category: Nucci NV]]
-[[Category: Nucci, N V]]
+[[Category: O'Brien ES]]
-[[Category: Tommos, C]]
+[[Category: Tommos C]]
-[[Category: Wand, A]]
+[[Category: Wand A]]
-[[Category: Electron transport]]
-[[Category: Paramagnetic]]
-[[Category: Reverse micelle]]
-[[Category: Structural water]]

2n3b

From Proteopedia

Revision as of 08:15, 8 March 2023

Structure of oxidized horse heart cytochrome c encapsulated in reverse micelles

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox