|
|
Line 3: |
Line 3: |
| <StructureSection load='2oef' size='340' side='right'caption='[[2oef]], [[Resolution|resolution]] 2.40Å' scene=''> | | <StructureSection load='2oef' size='340' side='right'caption='[[2oef]], [[Resolution|resolution]] 2.40Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2oef]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Leima Leima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OEF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OEF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2oef]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Leishmania_major Leishmania major]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OEF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OEF FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UGP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5664 LEIMA])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/UTP--glucose-1-phosphate_uridylyltransferase UTP--glucose-1-phosphate uridylyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.9 2.7.7.9] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oef OCA], [https://pdbe.org/2oef PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oef RCSB], [https://www.ebi.ac.uk/pdbsum/2oef PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oef ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oef OCA], [https://pdbe.org/2oef PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oef RCSB], [https://www.ebi.ac.uk/pdbsum/2oef PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oef ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q4QDU3_LEIMA Q4QDU3_LEIMA] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
Line 34: |
Line 34: |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Leima]] | + | [[Category: Leishmania major]] |
- | [[Category: UTP--glucose-1-phosphate uridylyltransferase]]
| + | [[Category: Steiner T]] |
- | [[Category: Steiner, T]] | + | |
- | [[Category: Beta-helix]]
| + | |
- | [[Category: Pyrophosphorylase]]
| + | |
- | [[Category: Rossmann-fold]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
Q4QDU3_LEIMA
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Uridine diphosphate-glucose pyrophosphorylase (UGPase) represents a ubiquitous enzyme, which catalyzes the formation of UDP-glucose, a key metabolite of the carbohydrate pathways of all organisms. In the protozoan parasite Leishmania major, which causes a broad spectrum of diseases and is transmitted to humans by sand fly vectors, UGPase represents a virulence factor because of its requirement for the synthesis of cell surface glycoconjugates. Here we present the crystal structures of the L. major UGPase in its uncomplexed apo form (open conformation) and in complex with UDP-glucose (closed conformation). The UGPase consists of three distinct domains. The N-terminal domain exhibits species-specific differences in length, which might permit distinct regulation mechanisms. The central catalytic domain resembles a Rossmann-fold and contains key residues that are conserved in many nucleotidyltransferases. The C-terminal domain forms a left-handed parallel beta-helix (LbetaH), which represents a rarely observed structural element. The presented structures together with mutagenesis analyses provide a basis for a detailed analysis of the catalytic mechanism and for the design of species-specific UGPase inhibitors.
Open and closed structures of the UDP-glucose pyrophosphorylase from Leishmania major.,Steiner T, Lamerz AC, Hess P, Breithaupt C, Krapp S, Bourenkov G, Huber R, Gerardy-Schahn R, Jacob U J Biol Chem. 2007 Apr 27;282(17):13003-10. Epub 2007 Feb 15. PMID:17303565[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Steiner T, Lamerz AC, Hess P, Breithaupt C, Krapp S, Bourenkov G, Huber R, Gerardy-Schahn R, Jacob U. Open and closed structures of the UDP-glucose pyrophosphorylase from Leishmania major. J Biol Chem. 2007 Apr 27;282(17):13003-10. Epub 2007 Feb 15. PMID:17303565 doi:http://dx.doi.org/10.1074/jbc.M609984200
|