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6zqo
From Proteopedia
(Difference between revisions)
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==EYFP mutant - F165G== | ==EYFP mutant - F165G== | ||
| - | <StructureSection load='6zqo' size='340' side='right'caption='[[6zqo]]' scene=''> | + | <StructureSection load='6zqo' size='340' side='right'caption='[[6zqo]], [[Resolution|resolution]] 2.20Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZQO FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6zqo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Recombinant_vesicular_stomatitis_indiana_virus_rvsv-g/gfp Recombinant vesicular stomatitis indiana virus rvsv-g/gfp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZQO FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zqo OCA], [https://pdbe.org/6zqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zqo RCSB], [https://www.ebi.ac.uk/pdbsum/6zqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zqo ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">G, GFP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=582817 Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zqo OCA], [https://pdbe.org/6zqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zqo RCSB], [https://www.ebi.ac.uk/pdbsum/6zqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zqo ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | For the whole GFP family, a few cases, when a single mutation in the chromophore environment strongly inhibits maturation, were described. Here we study EYFP-F165G - a variant of the enhanced yellow fluorescent protein - obtained by a single F165G replacement, and demonstrated multiple fluorescent states represented by the minor emission peaks in blue and yellow ranges (~470 and ~530 nm), and the major peak at ~330 nm. The latter has been assigned to tryptophan fluorescence, quenched due to excitation energy transfer to the mature chromophore in the parental EYFP protein. EYFP-F165G crystal structure revealed two general independent routes of post-translational chemistry, resulting in two main states of the polypeptide chain with the intact chromophore forming triad (~85%) and mature chromophore (~15%). Our experiments thus highlighted important stereochemical role of the 165th position strongly affecting spectral characteristics of the protein. On the basis of the determined EYFP-F165G three-dimensional structure, new variants with ~ 2-fold improved brightness were engineered. | ||
| + | |||
| + | Amino acid residue at the 165th position tunes EYFP chromophore maturation. A structure-based design.,Pletneva NV, Maksimov EG, Protasova EA, Mamontova AV, Simonyan TR, Ziganshin RH, Lukyanov KA, Muslinkina L, Pletnev S, Bogdanov AM, Pletnev VZ Comput Struct Biotechnol J. 2021 May 11;19:2950-2959. doi:, 10.1016/j.csbj.2021.05.017. eCollection 2021. PMID:34136094<ref>PMID:34136094</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6zqo" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Pletnev | + | [[Category: Recombinant vesicular stomatitis indiana virus rvsv-g/gfp]] |
| - | [[Category: Pletnev | + | [[Category: Pletnev, S V]] |
| - | [[Category: Pletneva | + | [[Category: Pletnev, V Z]] |
| + | [[Category: Pletneva, N V]] | ||
| + | [[Category: Alternative routes of post-translation chemistry]] | ||
| + | [[Category: Fluorescent protein]] | ||
Revision as of 03:47, 2 July 2021
EYFP mutant - F165G
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