2p5q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:08, 21 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2p5q' size='340' side='right'caption='[[2p5q]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='2p5q' size='340' side='right'caption='[[2p5q]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2p5q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Populus_balsamifera_subsp._trichocarpa_x_populus_deltoides Populus balsamifera subsp. trichocarpa x populus deltoides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5Q FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2p5q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Populus_trichocarpa_x_Populus_deltoides Populus trichocarpa x Populus deltoides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5Q FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2p5r|2p5r]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PtGPX5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3695 Populus balsamifera subsp. trichocarpa x Populus deltoides])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5q OCA], [https://pdbe.org/2p5q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5q RCSB], [https://www.ebi.ac.uk/pdbsum/2p5q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5q ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5q OCA], [https://pdbe.org/2p5q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5q RCSB], [https://www.ebi.ac.uk/pdbsum/2p5q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5q ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A3FNZ8_9ROSI A3FNZ8_9ROSI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5q ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5q ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Glutathione peroxidases (GPXs) are a group of enzymes that regulate the levels of reactive oxygen species in cells and tissues, and protect them against oxidative damage. Contrary to most of their counterparts in animal cells, the higher plant GPX homologues identified so far possess cysteine instead of selenocysteine in their active site. Interestingly, the plant GPXs are not dependent on glutathione but rather on thioredoxin as their in vitro electron donor. We have determined the crystal structures of the reduced and oxidized form of Populus trichocarpaxdeltoides GPX5 (PtGPX5), using a selenomethionine derivative. PtGPX5 exhibits an overall structure similar to that of the known animal GPXs. PtGPX5 crystallized in the assumed physiological dimeric form, displaying a pseudo ten-stranded beta sheet core. Comparison of both redox structures indicates that a drastic conformational change is necessary to bring the two distant cysteine residues together to form an intramolecular disulfide bond. In addition, a computer model of a complex of PtGPX5 and its in vitro recycling partner thioredoxin h1 is proposed on the basis of the crystal packing of the oxidized form enzyme. A possible role of PtGPX5 as a heavy-metal sink is also discussed.
 
- 
-
Crystal structures of a poplar thioredoxin peroxidase that exhibits the structure of glutathione peroxidases: insights into redox-driven conformational changes.,Koh CS, Didierjean C, Navrot N, Panjikar S, Mulliert G, Rouhier N, Jacquot JP, Aubry A, Shawkataly O, Corbier C J Mol Biol. 2007 Jul 13;370(3):512-29. Epub 2007 Apr 19. PMID:17531267<ref>PMID:17531267</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 2p5q" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Glutathione peroxidase|Glutathione peroxidase]]
*[[Glutathione peroxidase|Glutathione peroxidase]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Populus balsamifera subsp. trichocarpa x populus deltoides]]
+
[[Category: Populus trichocarpa x Populus deltoides]]
-
[[Category: Aubry, A]]
+
[[Category: Aubry A]]
-
[[Category: Corbier, C]]
+
[[Category: Corbier C]]
-
[[Category: Didierjean, C]]
+
[[Category: Didierjean C]]
-
[[Category: Jacquot, J P]]
+
[[Category: Jacquot J-P]]
-
[[Category: Koh, C S]]
+
[[Category: Koh CS]]
-
[[Category: Mulliert, G]]
+
[[Category: Mulliert G]]
-
[[Category: Navrot, N]]
+
[[Category: Navrot N]]
-
[[Category: Panjikar, S]]
+
[[Category: Panjikar S]]
-
[[Category: Rouhier, N]]
+
[[Category: Rouhier N]]
-
[[Category: Shawkataly, O]]
+
[[Category: Shawkataly O]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Thioredoxin fold]]
+

Current revision

Crystal structure of the poplar glutathione peroxidase 5 in the reduced form

PDB ID 2p5q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools