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7dzp

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==Cryo-EM structure of Patched1 (V1084A mutant) in lipid nanodisc==
==Cryo-EM structure of Patched1 (V1084A mutant) in lipid nanodisc==
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<StructureSection load='7dzp' size='340' side='right'caption='[[7dzp]]' scene=''>
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<StructureSection load='7dzp' size='340' side='right'caption='[[7dzp]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DZP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DZP FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7dzp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DZP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DZP FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dzp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dzp OCA], [https://pdbe.org/7dzp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dzp RCSB], [https://www.ebi.ac.uk/pdbsum/7dzp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dzp ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLR:CHOLESTEROL'>CLR</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Ptch1, Ptch ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dzp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dzp OCA], [https://pdbe.org/7dzp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dzp RCSB], [https://www.ebi.ac.uk/pdbsum/7dzp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dzp ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/PTC1_MOUSE PTC1_MOUSE]] Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.<ref>PMID:21537345</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The 12-transmembrane protein Patched (Ptc1) acts as a suppressor for Hedgehog (Hh) signaling by depleting sterols in the cytoplasmic membrane leaflet that are required for the activation of downstream regulators. The positive modulator Hh inhibits Ptc1's transporter function by binding to Ptc1 and its co-receptors, which are locally concentrated in invaginated microdomains known as caveolae. Here, we reconstitute the mouse Ptc1 into lipid nanodiscs and determine its structure using single-particle cryoelectron microscopy. The structure is overall similar to those in amphipol and detergents but displays various conformational differences in the transmembrane region. Although most particles show monomers, we observe Ptc1 dimers with distinct interaction patterns and different membrane curvatures, some of which are reminiscent of caveolae. We find that an extramembranous "hand-shake" region rich in hydrophobic and aromatic residues mediates inter-Ptc1 interactions under different membrane curvatures. Our data provide a plausible framework for Ptc1 clustering in the highly curved caveolae.
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Cryo-EM study of patched in lipid nanodisc suggests a structural basis for its clustering in caveolae.,Luo Y, Wan G, Zhang X, Zhou X, Wang Q, Fan J, Cai H, Ma L, Wu H, Qu Q, Cong Y, Zhao Y, Li D Structure. 2021 Jun 22. pii: S0969-2126(21)00208-2. doi:, 10.1016/j.str.2021.06.004. PMID:34174188<ref>PMID:34174188</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7dzp" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Cong Y]]
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[[Category: Lk3 transgenic mice]]
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[[Category: Li D]]
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[[Category: Cong, Y]]
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[[Category: Luo Y]]
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[[Category: Li, D]]
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[[Category: Qu Q]]
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[[Category: Luo, Y]]
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[[Category: Wan G]]
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[[Category: Qu, Q]]
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[[Category: Wang Q]]
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[[Category: Wan, G]]
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[[Category: Zhang X]]
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[[Category: Wang, Q]]
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[[Category: Zhao Y]]
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[[Category: Zhang, X]]
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[[Category: Zhao, Y]]
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[[Category: Caveolae]]
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[[Category: Hedgehog signaling]]
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[[Category: Lipid nanodisc]]
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[[Category: Membrane protein]]
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[[Category: Patched]]
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[[Category: Ptc1 dimer]]
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[[Category: Thermostable mutant]]

Revision as of 10:06, 14 July 2021

Cryo-EM structure of Patched1 (V1084A mutant) in lipid nanodisc

PDB ID 7dzp

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