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2q3u

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Current revision (11:17, 30 August 2023) (edit) (undo)
 
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<StructureSection load='2q3u' size='340' side='right'caption='[[2q3u]], [[Resolution|resolution]] 1.53&Aring;' scene=''>
<StructureSection load='2q3u' size='340' side='right'caption='[[2q3u]], [[Resolution|resolution]] 1.53&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2q3u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q3U FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2q3u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q3U FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.53&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1vkp|1vkp]]</div></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AIH, At5g08170, T22D6.110 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Agmatine_deiminase Agmatine deiminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.12 3.5.3.12] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q3u OCA], [https://pdbe.org/2q3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q3u RCSB], [https://www.ebi.ac.uk/pdbsum/2q3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q3u ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q3u OCA], [https://pdbe.org/2q3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q3u RCSB], [https://www.ebi.ac.uk/pdbsum/2q3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q3u ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/AGUA_ARATH AGUA_ARATH]] Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.
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[https://www.uniprot.org/uniprot/AGUA_ARATH AGUA_ARATH] Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Agmatine deiminase]]
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[[Category: Arabidopsis thaliana]]
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[[Category: Arath]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Structural genomic]]
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[[Category: Kondrashov DA]]
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[[Category: Kondrashov, D A]]
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[[Category: Levin EJ]]
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[[Category: Levin, E J]]
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[[Category: Phillips Jr GN]]
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[[Category: Phillips, G N]]
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[[Category: Wesenberg GE]]
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[[Category: Wesenberg, G E]]
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[[Category: Agmatine iminohydrolase]]
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[[Category: Aih]]
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[[Category: At5g08170]]
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[[Category: Cesg]]
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[[Category: Ensemble refinement]]
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[[Category: Hydrolase]]
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[[Category: N-carbamoylputrescine]]
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[[Category: Polyamine biosynthesis]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Putrescine]]
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[[Category: Refinement methodology development]]
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Current revision

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At5g08170, agmatine iminohydrolase

PDB ID 2q3u

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OCA

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