This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2q5r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:22, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2q5r' size='340' side='right'caption='[[2q5r]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='2q5r' size='340' side='right'caption='[[2q5r]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2q5r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q5R FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2q5r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q5R FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2jgv|2jgv]], [[2jg1|2jg1]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lacC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Tagatose-6-phosphate_kinase Tagatose-6-phosphate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.144 2.7.1.144] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5r OCA], [https://pdbe.org/2q5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q5r RCSB], [https://www.ebi.ac.uk/pdbsum/2q5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q5r ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5r OCA], [https://pdbe.org/2q5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q5r RCSB], [https://www.ebi.ac.uk/pdbsum/2q5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q5r ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LACC_STAAC LACC_STAAC]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 23: Line 23:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Tagatose-6-phosphate kinase]]
+
[[Category: Staphylococcus aureus]]
-
[[Category: Battaile, K]]
+
[[Category: Battaile K]]
-
[[Category: Chirgadze, N Y]]
+
[[Category: Chirgadze NY]]
-
[[Category: Dharamsi, A]]
+
[[Category: Dharamsi A]]
-
[[Category: Domagala, M]]
+
[[Category: Domagala M]]
-
[[Category: Edwards, A M]]
+
[[Category: Edwards AM]]
-
[[Category: McGrath, T E]]
+
[[Category: McGrath TE]]
-
[[Category: Pai, E F]]
+
[[Category: Pai EF]]
-
[[Category: Romanov, V]]
+
[[Category: Romanov V]]
-
[[Category: Soloveychik, M]]
+
[[Category: Soloveychik M]]
-
[[Category: Thambipillai, D]]
+
[[Category: Thambipillai D]]
-
[[Category: Virag, C]]
+
[[Category: Virag C]]
-
[[Category: Conformational change]]
+
-
[[Category: D-tagatose-6-phosphate kinase]]
+
-
[[Category: Kinase]]
+
-
[[Category: Lactose metabolism]]
+
-
[[Category: Phosphoryl transfer]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of apo Staphylococcus aureus D-tagatose-6-phosphate kinase

PDB ID 2q5r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools