7nza

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Current revision (12:42, 1 February 2024) (edit) (undo)
 
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==Structure of OBP1 from Varroa destructor, form P2<1>==
==Structure of OBP1 from Varroa destructor, form P2<1>==
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<StructureSection load='7nza' size='340' side='right'caption='[[7nza]]' scene=''>
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<StructureSection load='7nza' size='340' side='right'caption='[[7nza]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NZA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NZA FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7nza]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Varroa_destructor Varroa destructor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NZA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NZA FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7nza FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7nza OCA], [https://pdbe.org/7nza PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7nza RCSB], [https://www.ebi.ac.uk/pdbsum/7nza PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7nza ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.199&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NHE:2-[N-CYCLOHEXYLAMINO]ETHANE+SULFONIC+ACID'>NHE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7nza FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7nza OCA], [https://pdbe.org/7nza PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7nza RCSB], [https://www.ebi.ac.uk/pdbsum/7nza PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7nza ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A7M7KVA6_VARDE A0A7M7KVA6_VARDE]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Odorant-binding proteins (OBPs), as they occur in insects, form a distinct class of proteins that apparently has no closely related representatives in other animals. However, ticks, mites, spiders and millipedes contain genes encoding proteins with sequence similarity to insect OBPs. In this work, we have explored the structure and function of such non-insect OBPs in the mite Varroa destructor, a major pest of honey bee. Varroa OBPs present six cysteines paired into three disulphide bridges, but with positions in the sequence and connections different from those of their insect counterparts. VdesOBP1 structure was determined in two closely related crystal forms and appears to be a monomer. Its structure assembles five alpha-helices linked by three disulphide bridges, one of them exhibiting a different connection as compared to their insect counterparts. Comparison with classical OBPs reveals that the second of the six alpha-helices is lacking in VdesOBP1. Ligand-binding experiments revealed molecules able to bind only specific OBPs with a moderate affinity, suggesting that either optimal ligands have still to be identified, or post-translational modifications present in the native proteins may be essential for modulating binding activity, or else these OBPs might represent a failed attempt in evolution and are not used by the mites.
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A new non-classical fold of varroa odorant-binding proteins reveals a wide open internal cavity.,Amigues B, Zhu J, Gaubert A, Arena S, Renzone G, Leone P, Fischer IM, Paulsen H, Knoll W, Scaloni A, Roussel A, Cambillau C, Pelosi P Sci Rep. 2021 Jun 23;11(1):13172. doi: 10.1038/s41598-021-92604-2. PMID:34162975<ref>PMID:34162975</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7nza" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Odorant binding protein 3D structures|Odorant binding protein 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Varroa destructor]]
[[Category: Amigues B]]
[[Category: Amigues B]]
[[Category: Cambillau C]]
[[Category: Cambillau C]]

Current revision

Structure of OBP1 from Varroa destructor, form P2<1>

PDB ID 7nza

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