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6zm8
From Proteopedia
(Difference between revisions)
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==Structure of muramidase from Acremonium alcalophilum== | ==Structure of muramidase from Acremonium alcalophilum== | ||
| - | <StructureSection load='6zm8' size='340' side='right'caption='[[6zm8]]' scene=''> | + | <StructureSection load='6zm8' size='340' side='right'caption='[[6zm8]], [[Resolution|resolution]] 0.78Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZM8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZM8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6zm8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acremonium_alcalophilum Acremonium alcalophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZM8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZM8 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zm8 OCA], [https://pdbe.org/6zm8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zm8 RCSB], [https://www.ebi.ac.uk/pdbsum/6zm8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zm8 ProSAT]</span></td></tr> | + | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zm8 OCA], [https://pdbe.org/6zm8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zm8 RCSB], [https://www.ebi.ac.uk/pdbsum/6zm8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zm8 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Muramidases/lysozymes hydrolyse the peptidoglycan component of the bacterial cell wall. They are found in many of the glycoside hydrolase (GH) families. Family GH25 contains muramidases/lysozymes, known as CH type lysozymes, as they were initially discovered in the Chalaropsis species of fungus. The characterized enzymes from GH25 exhibit both beta-1,4-N-acetyl- and beta-1,4-N,6-O-diacetylmuramidase activities, cleaving the beta-1,4-glycosidic bond between N-acetylmuramic acid (NAM) and N-acetylglucosamine (NAG) moieties in the carbohydrate backbone of bacterial peptidoglycan. Here, a set of fungal GH25 muramidases were identified from a sequence search, cloned and expressed and screened for their ability to digest bacterial peptidoglycan, to be used in a commercial application in chicken feed. The screen identified the enzyme from Acremonium alcalophilum JCM 736 as a suitable candidate for this purpose and its relevant biochemical and biophysical and properties are described. We report the crystal structure of the A. alcalophilum enzyme at atomic, 0.78 A resolution, together with that of its homologue from Trichobolus zukalii at 1.4 A, and compare these with the structures of homologues. GH25 enzymes offer a new solution in animal feed applications such as for processing bacterial debris in the animal gut. | ||
| + | |||
| + | Fungal GH25 muramidases: New family members with applications in animal nutrition and a crystal structure at 0.78A resolution.,Moroz OV, Blagova E, Taylor E, Turkenburg JP, Skov LK, Gippert GP, Schnorr KM, Ming L, Ye L, Klausen M, Cohn MT, Schmidt EGW, Nymand-Grarup S, Davies GJ, Wilson KS PLoS One. 2021 Mar 12;16(3):e0248190. doi: 10.1371/journal.pone.0248190., eCollection 2021. PMID:33711051<ref>PMID:33711051</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6zm8" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Acremonium alcalophilum]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Blagova E]] | + | [[Category: Lysozyme]] |
| - | [[Category: Cohn | + | [[Category: Blagova, E]] |
| - | [[Category: Davies | + | [[Category: Cohn, M T]] |
| - | [[Category: Gippert | + | [[Category: Davies, G J]] |
| - | [[Category: Klausen M]] | + | [[Category: Gippert, G P]] |
| - | [[Category: Ming L]] | + | [[Category: Klausen, M]] |
| - | [[Category: Moroz | + | [[Category: Ming, L]] |
| - | [[Category: Nymand-Grarup S]] | + | [[Category: Moroz, O V]] |
| - | [[Category: Schmidt | + | [[Category: Nymand-Grarup, S]] |
| - | [[Category: Schnorr | + | [[Category: Schmidt, E G.W]] |
| - | [[Category: Skov | + | [[Category: Schnorr, K M]] |
| - | [[Category: Taylor E]] | + | [[Category: Skov, L K]] |
| - | [[Category: Turkenburg | + | [[Category: Taylor, E]] |
| - | [[Category: Wilson | + | [[Category: Turkenburg, J P]] |
| - | [[Category: Ye L]] | + | [[Category: Wilson, K S]] |
| + | [[Category: Ye, L]] | ||
| + | [[Category: Fungal]] | ||
| + | [[Category: Gh25]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Industrial application]] | ||
| + | [[Category: Muramidase]] | ||
| + | [[Category: Peptidoglycan cleavage]] | ||
Revision as of 07:06, 27 January 2022
Structure of muramidase from Acremonium alcalophilum
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Categories: Acremonium alcalophilum | Large Structures | Lysozyme | Blagova, E | Cohn, M T | Davies, G J | Gippert, G P | Klausen, M | Ming, L | Moroz, O V | Nymand-Grarup, S | Schmidt, E G.W | Schnorr, K M | Skov, L K | Taylor, E | Turkenburg, J P | Wilson, K S | Ye, L | Fungal | Gh25 | Hydrolase | Industrial application | Muramidase | Peptidoglycan cleavage
