1e0p
From Proteopedia
(Difference between revisions)
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<StructureSection load='1e0p' size='340' side='right'caption='[[1e0p]], [[Resolution|resolution]] 2.10Å' scene=''> | <StructureSection load='1e0p' size='340' side='right'caption='[[1e0p]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1e0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1e0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E0P FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e0p OCA], [https://pdbe.org/1e0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e0p RCSB], [https://www.ebi.ac.uk/pdbsum/1e0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e0p ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e0p OCA], [https://pdbe.org/1e0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e0p RCSB], [https://www.ebi.ac.uk/pdbsum/1e0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e0p ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e0p ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e0p ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | A wide variety of mechanisms are used to generate a proton-motive potential across cell membranes, a function lying at the heart of bioenergetics. Bacteriorhodopsin, the simplest known proton pump, provides a paradigm for understanding this process. Here we report, at 2.1 A resolution, the structural changes in bacteriorhodopsin immediately preceding the primary proton transfer event in its photocycle. The early structural rearrangements propagate from the protein's core towards the extracellular surface, disrupting the network of hydrogen-bonded water molecules that stabilizes helix C in the ground state. Concomitantly, a bend of this helix enables the negatively charged primary proton acceptor, Asp 85, to approach closer to the positively charged primary proton donor, the Schiff base. The primary proton transfer event would then neutralize these two groups, cancelling their electrostatic attraction and facilitating a relaxation of helix C to a less strained geometry. Reprotonation of the Schiff base by Asp 85 would thereby be impeded, ensuring vectorial proton transport. Structural rearrangements also occur near the protein's surface, aiding proton release to the extracellular medium. | ||
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| - | Helix deformation is coupled to vectorial proton transport in the photocycle of bacteriorhodopsin.,Royant A, Edman K, Ursby T, Pebay-Peyroula E, Landau EM, Neutze R Nature. 2000 Aug 10;406(6796):645-8. PMID:10949307<ref>PMID:10949307</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 1e0p" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]] | *[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]] | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Halobacterium | + | [[Category: Halobacterium salinarum]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Edman | + | [[Category: Edman K]] |
| - | [[Category: Landau | + | [[Category: Landau EM]] |
| - | [[Category: Neutze | + | [[Category: Neutze R]] |
| - | [[Category: Pebay-Peyroula | + | [[Category: Pebay-Peyroula E]] |
| - | [[Category: Royant | + | [[Category: Royant A]] |
| - | [[Category: Ursby | + | [[Category: Ursby T]] |
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Current revision
L intermediate of bacteriorhodopsin
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