7naa
From Proteopedia
(Difference between revisions)
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==Crystal structure of Mycobacterium tuberculosis H37Rv PknF kinase domain== | ==Crystal structure of Mycobacterium tuberculosis H37Rv PknF kinase domain== | ||
- | <StructureSection load='7naa' size='340' side='right'caption='[[7naa]]' scene=''> | + | <StructureSection load='7naa' size='340' side='right'caption='[[7naa]], [[Resolution|resolution]] 2.75Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NAA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NAA FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7naa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NAA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NAA FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7naa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7naa OCA], [https://pdbe.org/7naa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7naa RCSB], [https://www.ebi.ac.uk/pdbsum/7naa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7naa ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=V17:(4-{[4-(1-benzothiophen-2-yl)pyrimidin-2-yl]amino}phenyl)[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone'>V17</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pknF_1, pknF, pknF_2, C0094_09540, DSI38_08510, E5M05_19500, E5M52_18375, E5M78_18220, ERS007741_01296, ERS013471_03424, ERS027661_00065, ERS094182_03016, F6W99_00312, FRD82_04005, GCL30_17545, SAMEA2683035_01332 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7naa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7naa OCA], [https://pdbe.org/7naa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7naa RCSB], [https://www.ebi.ac.uk/pdbsum/7naa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7naa ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Mycobacterium tuberculosis (Mtb) has 11 Serine-Threonine Protein Kinases (STPK) that control numerous physiological processes, including cell growth, cell division, metabolic flow, and transcription. PknF is one of the 11 Mtb STPKs that has, among other substrates, two FHA domains (FHA-1 and FHA-2) of the ATP-Binding Cassette (ABC) transporter Rv1747. Phosphorylation in T152 and T210 located in a non-structured linker that connects Rv1747 FHA domains is considerate to be the regulatory mechanism of the transporter. In this work, we resolved the three-dimensional structure of the PknF catalytic domain (cPknF) in complex with the human kinase inhibitor IKK16. cPknF is conserved when compared to other STPKs but shows specific residues in the binding site where the inhibitor is positioned. In addition, using Small Angle X-Ray Scattering analysis we monitored the behavior of the wild type and three FHA-phosphomimetic mutants in solution, and measured the cPknF affinity for these domains. The kinase showed higher affinity for the non-phosphorylated wild type domain and preference for phosphorylation of T152 inducing the rapprochement of the domains and significant structural changes. The results shed some light on the process of regulating the transporter's activity by phosphorylation and arises important questions about evolution and importance of this mechanism for the bacillus. | ||
+ | |||
+ | Structure of the Mycobacterium tuberculosis cPknF and conformational changes induced in forkhead-associated regulatory domains.,Cabarca S, Frazao de Souza M, Albert de Oliveira A, Vignoli Muniz GS, Lamy MT, Vinicius Dos Reis C, Takarada J, Effer B, Souza LS, Iriarte de la Torre L, Counago R, Pinto Oliveira CL, Balan A Curr Res Struct Biol. 2021 Jul 23;3:165-178. doi: 10.1016/j.crstbi.2021.07.001., eCollection 2021. PMID:34382010<ref>PMID:34382010</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7naa" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Balan A]] | + | [[Category: Non-specific serine/threonine protein kinase]] |
- | [[Category: Cabarca S]] | + | [[Category: Balan, A]] |
- | [[Category: Counago | + | [[Category: Cabarca, S]] |
- | [[Category: Oliveira | + | [[Category: Counago, R M]] |
- | [[Category: Takarada | + | [[Category: Oliveira, A A]] |
- | [[Category: | + | [[Category: Reis, C V.dos]] |
+ | [[Category: Structural genomic]] | ||
+ | [[Category: Takarada, J E]] | ||
+ | [[Category: Antimicrobial protein]] | ||
+ | [[Category: Mtb]] | ||
+ | [[Category: Pknf]] | ||
+ | [[Category: PSI, Protein structure initiative]] | ||
+ | [[Category: Psi-biology]] | ||
+ | [[Category: Sgc]] | ||
+ | [[Category: Transferase]] |
Revision as of 06:37, 25 August 2021
Crystal structure of Mycobacterium tuberculosis H37Rv PknF kinase domain
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