6lnz

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==NMR solution structure of VEGF G-quadruplex bound a non-planar cyclometalated-carbene platinum(II) complex==
==NMR solution structure of VEGF G-quadruplex bound a non-planar cyclometalated-carbene platinum(II) complex==
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<StructureSection load='6lnz' size='340' side='right'caption='[[6lnz]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
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<StructureSection load='6lnz' size='340' side='right'caption='[[6lnz]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6lnz]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LNZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LNZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6lnz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LNZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LNZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EL9:cyclometalated-carbene+platinum(II)+complex'>EL9</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EL9:cyclometalated-carbene+platinum(II)+complex'>EL9</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lnz OCA], [https://pdbe.org/6lnz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lnz RCSB], [https://www.ebi.ac.uk/pdbsum/6lnz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lnz ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lnz OCA], [https://pdbe.org/6lnz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lnz RCSB], [https://www.ebi.ac.uk/pdbsum/6lnz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lnz ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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G-quadruplexes (G4s) are prevalent in oncogenes and are potential antitumor drug targets. However, binding selectivity of compounds to G4s still faces challenges. Herein, we report a platinum(II) complex (Pt1), whose affinity to G4-DNA is activated by adaptive binding and selectivity controlled by binding kinetics. The resolved structure of Pt1/VEGF-G4 (a promoter G4) shows that Pt1 matches 3'-G-tetrad of VEGF-G4 through Cl(-) -dissociation and loop rearrangement of VEGF-G4. Binding rate constants are determined by coordination bond breakage/formation, correlating fully with affinities. The selective rate-determining binding step, Cl(-) -dissociation upon G4-binding, is 2-3 orders of magnitude higher than dsDNA. Pt1 potently targets G4 in living cells, effectively represses VEGF expression, and inhibits vascular growth in zebrafish. We show adaptive G4-binding activation and controlled by kinetics, providing a complementary design principle for compounds targeting G4 or similar biomolecules.
 
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Selectivity and Targeting of G-Quadruplex Binders Activated by Adaptive Binding and Controlled by Chemical Kinetics.,Zhu BC, He J, Liu W, Xia XY, Liu LY, Liang BB, Yao HG, Liu B, Ji LN, Mao ZW Angew Chem Int Ed Engl. 2021 Jul 5;60(28):15340-15343. doi:, 10.1002/anie.202104624. Epub 2021 Jun 1. PMID:33899272<ref>PMID:33899272</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6lnz" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Liu, W]]
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[[Category: Liu W]]
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[[Category: Mao, Z W]]
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[[Category: Mao ZW]]
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[[Category: Zhu, B Z]]
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[[Category: Zhu BZ]]
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[[Category: Dna]]
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[[Category: Dna-ligand complex]]
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[[Category: Platinum complex]]
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[[Category: Solution structure]]
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[[Category: Vegf g-quadruplex]]
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Current revision

NMR solution structure of VEGF G-quadruplex bound a non-planar cyclometalated-carbene platinum(II) complex

PDB ID 6lnz

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