1kkc
From Proteopedia
(Difference between revisions)
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<StructureSection load='1kkc' size='340' side='right'caption='[[1kkc]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='1kkc' size='340' side='right'caption='[[1kkc]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1kkc]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KKC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KKC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1kkc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KKC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KKC FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kkc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kkc OCA], [https://pdbe.org/1kkc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kkc RCSB], [https://www.ebi.ac.uk/pdbsum/1kkc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kkc ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kkc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kkc OCA], [https://pdbe.org/1kkc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kkc RCSB], [https://www.ebi.ac.uk/pdbsum/1kkc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kkc ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/SODM_ASPFU SODM_ASPFU] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kkc ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kkc ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Manganese superoxide dismutase (MnSOD) of Aspergillus fumigatus, a fungus involved in many pulmonary complications, has been identified as IgE-binding protein. It has been shown also that MnSODs from other organisms, including human, are recognized by IgE Abs from individuals sensitized to A. fumigatus MnSOD. Comparison of the fungal and the human crystal structure should allow the identification of structural similarities responsible for IgE-mediated cross-reactivity. The three-dimensional structure of A. fumigatus MnSOD has been determined at 2-A resolution by x-ray diffraction analysis. Crystals belonged to space group P2(1)2(1)2(1) with unit cell dimensions of a = 65.88 A, b = 98.7 A, and c = 139.28 A. The structure was solved by molecular replacement using the structure of the human MnSOD as a search model. The final refined model included four chains of 199-200 amino acids, four manganese ions, and 745 water molecules, with a crystallographic R-factor of 19.4% and a free R-factor of 23.3%. Like MnSODs of other eukaryotic organisms, A. fumigatus MnSOD forms a homotetramer with the manganese ions coordinated by three histidines, one aspartic acid, and one water molecule. The fungal and the human MnSOD share high similarity on the level of both primary and tertiary structure. We identified conserved amino acids that are solvent exposed in the fungal and the human crystal structure and are therefore potentially involved in IgE-mediated cross-reactivity. | ||
- | |||
- | Comparison of the crystal structures of the human manganese superoxide dismutase and the homologous Aspergillus fumigatus allergen at 2-A resolution.,Fluckiger S, Mittl PR, Scapozza L, Fijten H, Folkers G, Grutter MG, Blaser K, Crameri R J Immunol. 2002 Feb 1;168(3):1267-72. PMID:11801664<ref>PMID:11801664</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1kkc" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]] | *[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Aspergillus fumigatus]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | + | [[Category: Blaser K]] | |
- | [[Category: Blaser | + | [[Category: Crameri R]] |
- | [[Category: Crameri | + | [[Category: Fijten H]] |
- | [[Category: Fijten | + | [[Category: Fluckiger S]] |
- | [[Category: Fluckiger | + | [[Category: Folkers G]] |
- | [[Category: Folkers | + | [[Category: Grutter MG]] |
- | [[Category: Grutter | + | [[Category: Mittl PRE]] |
- | [[Category: Mittl | + | [[Category: Scapozza L]] |
- | [[Category: Scapozza | + | |
- | + | ||
- | + |
Current revision
Crystal structure of Aspergillus fumigatus MnSOD
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