This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7o1p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:43, 1 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7o1p' size='340' side='right'caption='[[7o1p]], [[Resolution|resolution]] 2.58&Aring;' scene=''>
<StructureSection load='7o1p' size='340' side='right'caption='[[7o1p]], [[Resolution|resolution]] 2.58&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7o1p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thema Thema]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O1P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7o1p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O1P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.58&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7o1o|7o1o]], [[7o1s|7o1s]], [[7o1t|7o1t]], [[7o25|7o25]], [[7o26|7o26]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TM_1269, THEMA_07990, Tmari_1274 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 THEMA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o1p OCA], [https://pdbe.org/7o1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o1p RCSB], [https://www.ebi.ac.uk/pdbsum/7o1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o1p ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o1p OCA], [https://pdbe.org/7o1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o1p RCSB], [https://www.ebi.ac.uk/pdbsum/7o1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o1p ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/HYDE_THEMA HYDE_THEMA]] Required for the maturation of the [FeFe]-hydrogenase HydA (By similarity). Catalyzes the reductive cleavage of S-adenosyl-L-methionine (in vitro), suggesting it may contribute to the biosynthesis of an essential sulfur-containing ligand that binds to the hydrogenase active site [2Fe-2S] cluster (PubMed:16137685).[UniProtKB:Q97IK9]<ref>PMID:16137685</ref>
+
[https://www.uniprot.org/uniprot/HYDE_THEMA HYDE_THEMA] Required for the maturation of the [FeFe]-hydrogenase HydA (By similarity). Catalyzes the reductive cleavage of S-adenosyl-L-methionine (in vitro), suggesting it may contribute to the biosynthesis of an essential sulfur-containing ligand that binds to the hydrogenase active site [2Fe-2S] cluster (PubMed:16137685).[UniProtKB:Q97IK9]<ref>PMID:16137685</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thema]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Basu, D]]
+
[[Category: Basu D]]
-
[[Category: Britt, R D]]
+
[[Category: Britt RD]]
-
[[Category: Liu, L]]
+
[[Category: Liu L]]
-
[[Category: Martin, L]]
+
[[Category: Martin L]]
-
[[Category: Nicolet, Y]]
+
[[Category: Nicolet Y]]
-
[[Category: Rauchfuss, T]]
+
[[Category: Rauchfuss T]]
-
[[Category: Rohac, R]]
+
[[Category: Rohac R]]
-
[[Category: Tao, L]]
+
[[Category: Tao L]]
-
[[Category: Hydrogenase maturase]]
+
-
[[Category: Metal binding protein]]
+
-
[[Category: Metalloprotein]]
+
-
[[Category: Radical sam protein]]
+

Current revision

[FeFe]-hydrogenase maturase HydE from T. Maritima (C-ter stretch absent)

PDB ID 7o1p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools