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7de7

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Current revision (16:31, 29 November 2023) (edit) (undo)
 
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==Crystal structure of PDZD7 HHD domain==
==Crystal structure of PDZD7 HHD domain==
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<StructureSection load='7de7' size='340' side='right'caption='[[7de7]]' scene=''>
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<StructureSection load='7de7' size='340' side='right'caption='[[7de7]], [[Resolution|resolution]] 1.49&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DE7 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7de7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DE7 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7de7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7de7 OCA], [https://pdbe.org/7de7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7de7 RCSB], [https://www.ebi.ac.uk/pdbsum/7de7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7de7 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.49&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2Q5:(2R)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2-HYDROXYPROPYL]OXY}PROPYL]OXY}PROPYL]OXY}PROPAN-1-OL'>2Q5</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7de7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7de7 OCA], [https://pdbe.org/7de7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7de7 RCSB], [https://www.ebi.ac.uk/pdbsum/7de7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7de7 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PDZD7_MOUSE PDZD7_MOUSE] In cochlear developing hair cells, essential in organizing the USH2 complex at stereocilia ankle links (PubMed:24334608). Blocks inhibition of adenylate cyclase activity mediated by ADGRV1 (PubMed:24962568).<ref>PMID:24334608</ref> <ref>PMID:24962568</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Usher syndrome (USH) is the leading cause of hereditary hearing-vision loss in humans. PDZ domain-containing 7 (PDZD7) has been reported to be a modifier of and contributor to USH. PDZD7 co-localizes with USH2 proteins in the inner ear hair cells and is essential for ankle-link formation and stereocilia development. PDZD7 contains three PDZ domains and a low-complexity region between the last two PDZ domains, which has been overlooked in the previous studies. Here we characterized a well-folded harmonin homology domain (HHD) from the middle region and solved the PDZD7 HHD structure at the resolution of 1.49 A. PDZD7 HHD adopts the same five-helix fold as other HHDs found in Harmonin and Whirlin; however, in PDZD7 HHD, a unique alpha1N helix occupies the canonical binding pocket, suggesting a distinct binding mode. Moreover, we found that the PDZD7 HHD domain can bind lipid and mediate the localization of PDZD7 to the plasma membrane in HEK293T cells. Intriguingly, a hearing-loss mutation at the N-terminal extension region of the HHD can disrupt the lipid-binding ability of PDZD7 HHD, suggesting that HHD-mediated membrane targeting is required for the hearing process. This structural and biochemical characterization of the PDZD7 HHD region provides mechanistic explanations for human deafness-causing mutations in PDZD7. Furthermore, this structure will also facilitate biochemical and functional studies of other HHDs.
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Structure and Membrane Targeting of the PDZD7 Harmonin Homology Domain (HHD) Associated With Hearing Loss.,Lin L, Wang H, Ren D, Xia Y, He G, Lu Q Front Cell Dev Biol. 2021 Apr 15;9:642666. doi: 10.3389/fcell.2021.642666., eCollection 2021. PMID:33937240<ref>PMID:33937240</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7de7" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Mus musculus]]
[[Category: Lin L]]
[[Category: Lin L]]
[[Category: Lu Q]]
[[Category: Lu Q]]
[[Category: Wang H]]
[[Category: Wang H]]

Current revision

Crystal structure of PDZD7 HHD domain

PDB ID 7de7

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