1nm3
From Proteopedia
(Difference between revisions)
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<StructureSection load='1nm3' size='340' side='right'caption='[[1nm3]], [[Resolution|resolution]] 2.80Å' scene=''> | <StructureSection load='1nm3' size='340' side='right'caption='[[1nm3]], [[Resolution|resolution]] 2.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1nm3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1nm3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NM3 FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nm3 OCA], [https://pdbe.org/1nm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nm3 RCSB], [https://www.ebi.ac.uk/pdbsum/1nm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nm3 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nm3 OCA], [https://pdbe.org/1nm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nm3 RCSB], [https://www.ebi.ac.uk/pdbsum/1nm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nm3 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/PRX5_HAEIN PRX5_HAEIN] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nm3 ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nm3 ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Cellular redox control is often mediated by oxidation and reduction of cysteine residues in the redox-sensitive proteins, where thioredoxin and glutaredoxin (Grx) play as electron donors for the oxidized proteins. Despite the importance of protein-protein interactions between the electron donor and acceptor proteins, there has been no structural information for the interaction of thioredoxin or Grx with natural target proteins. Here, we present the crystal structure of a novel Haemophilus influenza peroxiredoxin (Prx) hybrid Prx5 determined at 2.8-A resolution. The structure reveals that hybrid Prx5 forms a tightly associated tetramer where active sites of Prx and Grx domains of different monomers interact with each other. The Prx-Grx interface comprises specific charge interactions surrounded by weak interactions, providing insight into the target recognition mechanism of Grx. The tetrameric structure also exhibits a flexible active site and alternative Prx-Grx interactions, which appear to facilitate the electron transfer from Grx to Prx domain. Differences of electron donor binding surfaces in Prx proteins revealed by an analysis based on the structural information explain the electron donor specificities of various Prx proteins. | ||
- | |||
- | The tetrameric structure of Haemophilus influenza hybrid Prx5 reveals interactions between electron donor and acceptor proteins.,Kim SJ, Woo JR, Hwang YS, Jeong DG, Shin DH, Kim K, Ryu SE J Biol Chem. 2003 Mar 21;278(12):10790-8. Epub 2003 Jan 14. PMID:12529327<ref>PMID:12529327</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1nm3" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Haemophilus influenzae]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Hwang | + | [[Category: Hwang YS]] |
- | [[Category: Jeong | + | [[Category: Jeong DG]] |
- | [[Category: Kim | + | [[Category: Kim KH]] |
- | [[Category: Kim | + | [[Category: Kim SJ]] |
- | [[Category: Ryu | + | [[Category: Ryu SE]] |
- | [[Category: Shin | + | [[Category: Shin DH]] |
- | [[Category: Woo | + | [[Category: Woo JR]] |
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Revision as of 08:51, 10 April 2024
Crystal structure of Heamophilus influenza hybrid-Prx5
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Categories: Haemophilus influenzae | Large Structures | Hwang YS | Jeong DG | Kim KH | Kim SJ | Ryu SE | Shin DH | Woo JR