7o6e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:59, 14 July 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7o6e' size='340' side='right'caption='[[7o6e]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='7o6e' size='340' side='right'caption='[[7o6e]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7o6e]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O6E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O6E FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O6E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O6E FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bfrB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o6e OCA], [https://pdbe.org/7o6e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o6e RCSB], [https://www.ebi.ac.uk/pdbsum/7o6e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o6e ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o6e OCA], [https://pdbe.org/7o6e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o6e RCSB], [https://www.ebi.ac.uk/pdbsum/7o6e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o6e ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
 
-
[[https://www.uniprot.org/uniprot/BFRB_MYCTU BFRB_MYCTU]] Iron-storage protein that displays ferroxidase activity, catalyzing the oxidation of Fe(2+) ions into Fe(3+) ions, that can then be deposited as a ferric-oxide mineral core within the central cavity of the protein complex.<ref>PMID:21494619</ref>
 
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
The use of cryo-EM continues to expand worldwide and calls for good-quality standard proteins with simple protocols for their production. Here, a straightforward expression and purification protocol is presented that provides an apoferritin, bacterioferritin B (BfrB), from Mycobacterium tuberculosis with high yield and purity. A 2.12 A resolution cryo-EM structure of BfrB is reported, showing the typical cage-like oligomer constituting of 24 monomers related by 432 symmetry. However, it also contains a unique C-terminal extension (164-181), which loops into the cage region of the shell and provides extra stability to the protein. Part of this region was ambiguous in previous crystal structures but could be built within the cryo-EM map. These findings and this protocol could serve the growing cryo-EM community in characterizing and pushing the limits of their electron microscopes and workflows.
 
- 
-
Mycobacterium tuberculosis ferritin: a suitable workhorse protein for cryo-EM development.,Gijsbers A, Zhang Y, Gao Y, Peters PJ, Ravelli RBG Acta Crystallogr D Struct Biol. 2021 Aug 1;77(Pt 8):1077-1083. doi:, 10.1107/S2059798321007233. Epub 2021 Jul 29. PMID:34342280<ref>PMID:34342280</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 7o6e" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Ferritin 3D structures|Ferritin 3D structures]]
*[[Ferritin 3D structures|Ferritin 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ferroxidase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Myctu]]
+
[[Category: Gao Y]]
-
[[Category: Gao, Y]]
+
[[Category: Gijsbers A]]
-
[[Category: Gijsbers, A]]
+
[[Category: Peters PJ]]
-
[[Category: Peters, P J]]
+
[[Category: Ravelli RBG]]
-
[[Category: Ravelli, R B.G]]
+
[[Category: Zhang Y]]
-
[[Category: Zhang, Y]]
+
-
[[Category: Bacterial ferritin]]
+
-
[[Category: Iron storage]]
+
-
[[Category: Metal transport]]
+
-
[[Category: Octahedral symmetry]]
+

Current revision

2.12 A cryo-EM structure of Mycobacterium tuberculosis Ferritin

PDB ID 7o6e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools