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6ycm

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Current revision (13:24, 24 January 2024) (edit) (undo)
 
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<StructureSection load='6ycm' size='340' side='right'caption='[[6ycm]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='6ycm' size='340' side='right'caption='[[6ycm]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6ycm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amys7 Amys7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YCM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6ycm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amycolatopsis_sp._ATCC_39116 Amycolatopsis sp. ATCC 39116]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YCM FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=V55:4-HYDROXY-3-METHOXYBENZALDEHYDE'>V55</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gcoA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=385957 AMYS7])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=V55:4-HYDROXY-3-METHOXYBENZALDEHYDE'>V55</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ycm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ycm OCA], [https://pdbe.org/6ycm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ycm RCSB], [https://www.ebi.ac.uk/pdbsum/6ycm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ycm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ycm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ycm OCA], [https://pdbe.org/6ycm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ycm RCSB], [https://www.ebi.ac.uk/pdbsum/6ycm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ycm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/GCOA_AMYS7 GCOA_AMYS7]] Part of a two-component P450 system that efficiently O-demethylates diverse aromatic substrates such as guaiacol and a wide variety of lignin-derived monomers. Is likely involved in lignin degradation, allowing Amycolatopsis sp. ATCC 39116 to catabolize plant biomass. GcoA binds and processes the substrate with electrons supplied by the GcoB subunit.<ref>PMID:29950589</ref>
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[https://www.uniprot.org/uniprot/GCOA_AMYS7 GCOA_AMYS7] Part of a two-component P450 system that efficiently O-demethylates diverse aromatic substrates such as guaiacol and a wide variety of lignin-derived monomers. Is likely involved in lignin degradation, allowing Amycolatopsis sp. ATCC 39116 to catabolize plant biomass. GcoA binds and processes the substrate with electrons supplied by the GcoB subunit.<ref>PMID:29950589</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Amys7]]
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[[Category: Amycolatopsis sp. ATCC 39116]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Beckham, G T]]
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[[Category: Beckham GT]]
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[[Category: DuBois, J L]]
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[[Category: DuBois JL]]
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[[Category: Ellis, E S]]
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[[Category: Ellis ES]]
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[[Category: Hinchen, D J]]
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[[Category: Hinchen DJ]]
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[[Category: Mallinson, S J.B]]
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[[Category: Mallinson SJB]]
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[[Category: McGeehan, J E]]
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[[Category: McGeehan JE]]
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[[Category: Aromatic catabolism]]
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[[Category: Cytochrome p450]]
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[[Category: Lignin valorization]]
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[[Category: Oxidoreductase]]
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[[Category: Protein engineering]]
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Current revision

Crystal structure of GcoA T296S bound to p-vanillin

PDB ID 6ycm

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