1q9h
From Proteopedia
(Difference between revisions)
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<StructureSection load='1q9h' size='340' side='right'caption='[[1q9h]], [[Resolution|resolution]] 2.35Å' scene=''> | <StructureSection load='1q9h' size='340' side='right'caption='[[1q9h]], [[Resolution|resolution]] 2.35Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1q9h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1q9h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rasamsonia_emersonii Rasamsonia emersonii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q9H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q9H FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> |
- | + | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q9h OCA], [https://pdbe.org/1q9h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q9h RCSB], [https://www.ebi.ac.uk/pdbsum/1q9h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q9h ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q9h OCA], [https://pdbe.org/1q9h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q9h RCSB], [https://www.ebi.ac.uk/pdbsum/1q9h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q9h ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q8TFL9_TALEM Q8TFL9_TALEM] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q9h ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q9h ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The X-ray structure of native cellobiohydrolase IB (CBH IB) from the filamentous fungus Talaromyces emersonii, PDB 1Q9H, was solved to 2.4 A by molecular replacement. 1Q9H is a glycoprotein that consists of a large, single domain with dimensions of approximately 60 A x 40 A x 50 A and an overall beta-sandwich structure, the characteristic fold of Family 7 glycosyl hydrolases (GH7). It is the first structure of a native glycoprotein and cellulase from this thermophilic eukaryote. The long cellulose-binding tunnel seen in GH7 Cel7A from Trichoderma reesei is conserved in 1Q9H, as are the catalytic residues. As a result of deletions and other changes in loop regions, the binding and catalytic properties of T. emersonii 1Q9H are different. The gene (cel7) encoding CBH IB was isolated from T. emersonii and expressed heterologously with an N-terminal polyHis-tag, in Escherichia coli. The deduced amino acid sequence of cel7 is homologous to fungal cellobiohydrolases in GH7. The recombinant cellobiohydrolase was virtually inactive against methylumberiferyl-cellobioside and chloronitrophenyl-lactoside, but partial activity could be restored after refolding of the urea-denatured enzyme. Profiles of cel7 expression in T. emersonii, investigated by Northern blot analysis, revealed that expression is regulated at the transcriptional level. Putative regulatory element consensus sequences for cellulase transcription factors have been identified in the upstream region of the cel7 genomic sequence. | ||
- | |||
- | Three-dimensional structure of a thermostable native cellobiohydrolase, CBH IB, and molecular characterization of the cel7 gene from the filamentous fungus, Talaromyces emersonii.,Grassick A, Murray PG, Thompson R, Collins CM, Byrnes L, Birrane G, Higgins TM, Tuohy MG Eur J Biochem. 2004 Nov;271(22):4495-506. PMID:15560790<ref>PMID:15560790</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1q9h" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Cellobiohydrolase 3D structures|Cellobiohydrolase 3D structures]] | *[[Cellobiohydrolase 3D structures|Cellobiohydrolase 3D structures]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Rasamsonia emersonii]] |
- | [[Category: Birrane | + | [[Category: Birrane G]] |
- | [[Category: Byrnes | + | [[Category: Byrnes L]] |
- | [[Category: Collins | + | [[Category: Collins CM]] |
- | [[Category: Grassick | + | [[Category: Grassick A]] |
- | [[Category: Higgins | + | [[Category: Higgins TM]] |
- | [[Category: Murray | + | [[Category: Murray PG]] |
- | [[Category: Thompson | + | [[Category: Thompson R]] |
- | [[Category: Tuohy | + | [[Category: Tuohy MG]] |
- | + | ||
- | + |
Revision as of 06:02, 17 April 2024
3-Dimensional structure of native Cel7A from Talaromyces emersonii
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