This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1th5
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Solution structure of C-terminal domain of NifU-like protein from Oryza sativa== | ==Solution structure of C-terminal domain of NifU-like protein from Oryza sativa== | ||
| - | <StructureSection load='1th5' size='340' side='right'caption='[[1th5 | + | <StructureSection load='1th5' size='340' side='right'caption='[[1th5]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1th5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1th5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TH5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TH5 FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1th5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1th5 OCA], [https://pdbe.org/1th5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1th5 RCSB], [https://www.ebi.ac.uk/pdbsum/1th5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1th5 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1th5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1th5 OCA], [https://pdbe.org/1th5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1th5 RCSB], [https://www.ebi.ac.uk/pdbsum/1th5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1th5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/NIFU1_ORYSJ NIFU1_ORYSJ] Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins (By similarity). | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 19: | Line 19: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1th5 ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1th5 ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | NifU-like proteins are a highly conserved protein that serves as the scaffold for assembly of Fe-S clusters. Chloroplastic NifU-like proteins have tandem NifU like domains, named domain I and domain II. Although the amino acid sequences of these domains are very similar to each other, the predicted functional region for the Fe-S cluster assembly, the CXXC motif, exists only in domain I. The structure of the domain II of chloroplastic NifU-like protein OsNifU1A has an alpha-beta sandwich structure containing two alpha helices located on one side of the beta-sheet. The electrostatic surface potential of OsNifU1A domain II is predominantly positively charged. Chloroplastic NifU-like proteins are targeted to ferredoxin for transferring the Fe-S cluster. The ferredoxin presents an overall negatively charged surface, which may evoke an electrostatic association with OsNifU1A domain II. | ||
| - | |||
| - | The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.,Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13. PMID:17431550<ref>PMID:17431550</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 1th5" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Oryza sativa]] |
| - | [[Category: Asayama | + | [[Category: Asayama M]] |
| - | [[Category: Inagaki | + | [[Category: Inagaki F]] |
| - | [[Category: Katoh | + | [[Category: Katoh E]] |
| - | [[Category: Katoh | + | [[Category: Katoh S]] |
| - | [[Category: Kumeta | + | [[Category: Kumeta H]] |
| - | [[Category: Ogura | + | [[Category: Ogura K]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Revision as of 08:41, 1 May 2024
Solution structure of C-terminal domain of NifU-like protein from Oryza sativa
| |||||||||||
Categories: Large Structures | Oryza sativa | Asayama M | Inagaki F | Katoh E | Katoh S | Kumeta H | Ogura K
