7or6

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==The crystal structure of the domain-swapped dimer of onconase==
==The crystal structure of the domain-swapped dimer of onconase==
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<StructureSection load='7or6' size='340' side='right'caption='[[7or6]]' scene=''>
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<StructureSection load='7or6' size='340' side='right'caption='[[7or6]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OR6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7or6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OR6 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7or6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7or6 OCA], [https://pdbe.org/7or6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7or6 RCSB], [https://www.ebi.ac.uk/pdbsum/7or6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7or6 ProSAT]</span></td></tr>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7or6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7or6 OCA], [https://pdbe.org/7or6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7or6 RCSB], [https://www.ebi.ac.uk/pdbsum/7or6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7or6 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/RNP30_LITPI RNP30_LITPI]] Basic protein with antiproliferative/cytotoxic activity against several tumor cell lines in vitro, as well as antitumor in vivo. It exhibits a ribonuclease-like activity against high molecular weight ribosomal RNA.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Onconase (ONC) is a monomeric amphibian "pancreatic-type" RNase endowed with remarkable anticancer activity. ONC spontaneously forms traces of a dimer (ONC-D) in solution, while larger amounts can be formed when ONC is lyophilized from mildly acidic solutions. Here, we report the crystal structure of ONC-D and analyze its catalytic and antitumor activities in comparison to ONC. ONC-D forms via the three-dimensional swapping of the N-terminal alpha-helix between two monomers, but it displays a significantly different quaternary structure from that previously modeled [Fagagnini A et al., 2017, Biochem J 474, 3767-81], and based on the crystal structure of the RNase A N-terminal swapped dimer. ONC-D presents a variable quaternary assembly deriving from a variable open interface, while it retains a catalytic activity that is similar to that of ONC. Notably, ONC-D displays antitumor activity against two human melanoma cell lines, although it exerts a slightly lower cytostatic effect than the monomer. The inhibition of melanoma cell proliferation by ONC or ONC-D is associated with the reduction of the expression of the anti-apoptotic B cell lymphoma 2 (Bcl2), as well as of the total expression and phosphorylation of the Signal Transducer and Activator of Transcription (STAT)-3. Phosphorylation is inhibited in both STAT3 Tyr705 and Ser727 key-residues, as well as in its upstream tyrosine-kinase Src. Consequently, both ONC species should exert their anti-cancer action by inhibiting the pro-tumor pleiotropic STAT3 effects deriving either by its phospho-tyrosine activation or by its non-canonical signaling pathways. Both ONC species, indeed, increase the portion of A375 cells undergoing apoptotic cell death. This study expands the variety of RNase domain-swapped dimeric structures, underlining the unpredictability of the open interface arrangement upon domain swapping. Structural data also offer valuable insights to analyze the differences in the measured ONC or ONC-D biological activities.
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The crystal structure of the domain-swapped dimer of onconase highlights some catalytic and antitumor activity features of the enzyme.,Gotte G, Campagnari R, Loreto D, Bettin I, Calzetti F, Menegazzi M, Merlino A Int J Biol Macromol. 2021 Sep 24;191:560-571. doi:, 10.1016/j.ijbiomac.2021.09.095. PMID:34563576<ref>PMID:34563576</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7or6" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Loreto D]]
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[[Category: Loreto, D]]
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[[Category: Merlino A]]
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[[Category: Merlino, A]]
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[[Category: 3d domain swapping]]
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[[Category: Antitumor activity]]
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[[Category: Hydrolase]]
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[[Category: Onconase]]
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[[Category: Onconase dimer]]
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[[Category: Ribonuclease]]

Revision as of 12:58, 13 October 2021

The crystal structure of the domain-swapped dimer of onconase

PDB ID 7or6

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