7ord
From Proteopedia
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==The crystal structure of the domain-swapped dimer of onconase (2)== | ==The crystal structure of the domain-swapped dimer of onconase (2)== | ||
| - | <StructureSection load='7ord' size='340' side='right'caption='[[7ord]]' scene=''> | + | <StructureSection load='7ord' size='340' side='right'caption='[[7ord]], [[Resolution|resolution]] 2.14Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ORD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ORD FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7ord]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ORD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ORD FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ord FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ord OCA], [https://pdbe.org/7ord PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ord RCSB], [https://www.ebi.ac.uk/pdbsum/7ord PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ord ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ord FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ord OCA], [https://pdbe.org/7ord PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ord RCSB], [https://www.ebi.ac.uk/pdbsum/7ord PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ord ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/RNP30_LITPI RNP30_LITPI]] Basic protein with antiproliferative/cytotoxic activity against several tumor cell lines in vitro, as well as antitumor in vivo. It exhibits a ribonuclease-like activity against high molecular weight ribosomal RNA. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Onconase (ONC) is a monomeric amphibian "pancreatic-type" RNase endowed with remarkable anticancer activity. ONC spontaneously forms traces of a dimer (ONC-D) in solution, while larger amounts can be formed when ONC is lyophilized from mildly acidic solutions. Here, we report the crystal structure of ONC-D and analyze its catalytic and antitumor activities in comparison to ONC. ONC-D forms via the three-dimensional swapping of the N-terminal alpha-helix between two monomers, but it displays a significantly different quaternary structure from that previously modeled [Fagagnini A et al., 2017, Biochem J 474, 3767-81], and based on the crystal structure of the RNase A N-terminal swapped dimer. ONC-D presents a variable quaternary assembly deriving from a variable open interface, while it retains a catalytic activity that is similar to that of ONC. Notably, ONC-D displays antitumor activity against two human melanoma cell lines, although it exerts a slightly lower cytostatic effect than the monomer. The inhibition of melanoma cell proliferation by ONC or ONC-D is associated with the reduction of the expression of the anti-apoptotic B cell lymphoma 2 (Bcl2), as well as of the total expression and phosphorylation of the Signal Transducer and Activator of Transcription (STAT)-3. Phosphorylation is inhibited in both STAT3 Tyr705 and Ser727 key-residues, as well as in its upstream tyrosine-kinase Src. Consequently, both ONC species should exert their anti-cancer action by inhibiting the pro-tumor pleiotropic STAT3 effects deriving either by its phospho-tyrosine activation or by its non-canonical signaling pathways. Both ONC species, indeed, increase the portion of A375 cells undergoing apoptotic cell death. This study expands the variety of RNase domain-swapped dimeric structures, underlining the unpredictability of the open interface arrangement upon domain swapping. Structural data also offer valuable insights to analyze the differences in the measured ONC or ONC-D biological activities. | ||
| + | |||
| + | The crystal structure of the domain-swapped dimer of onconase highlights some catalytic and antitumor activity features of the enzyme.,Gotte G, Campagnari R, Loreto D, Bettin I, Calzetti F, Menegazzi M, Merlino A Int J Biol Macromol. 2021 Sep 24;191:560-571. doi:, 10.1016/j.ijbiomac.2021.09.095. PMID:34563576<ref>PMID:34563576</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7ord" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Loreto D]] | + | [[Category: Loreto, D]] |
| - | [[Category: Merlino A]] | + | [[Category: Merlino, A]] |
| + | [[Category: 3d domain swapping]] | ||
| + | [[Category: Antitumor activity]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Onconase]] | ||
| + | [[Category: Onconase dimer]] | ||
| + | [[Category: Ribonuclease]] | ||
Revision as of 12:58, 13 October 2021
The crystal structure of the domain-swapped dimer of onconase (2)
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