This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Aldolase 3D structures
From Proteopedia
(Difference between revisions)
| Line 8: | Line 8: | ||
**[[1xfb]], [[1qo5]], [[2ald]], [[1ald]], [[5ky6]] – hFBPA – human<br /> | **[[1xfb]], [[1qo5]], [[2ald]], [[1ald]], [[5ky6]] – hFBPA – human<br /> | ||
**[[1xdl]], [[1xdm]] – hFBPA (mutant)<br /> | **[[1xdl]], [[1xdm]] – hFBPA (mutant)<br /> | ||
| - | **[[1zah]], [[1fdj]], [[1ewd]], [[1ewe]], [[1ex5]], [[1ado]], [[5vy5]] - rFBPA – rabbit<br /> | + | **[[1zah]], [[1fdj]], [[1ewd]], [[1ewe]], [[1ex5]], [[1ado]], [[5vy5]], [[7ka4]] - rFBPA – rabbit<br /> |
**[[3dfn]], [[3dfp]], [[3dfq]], [[3dft]], [[2bv4]], [[3b8d]], [[3bv4]], [[5f4x]] – rFBPA (mutant)<br /> | **[[3dfn]], [[3dfp]], [[3dfq]], [[3dft]], [[2bv4]], [[3b8d]], [[3bv4]], [[5f4x]] – rFBPA (mutant)<br /> | ||
| - | **[[6v20]] - rFBPA – Cryo EM<br /> | + | **[[6v20]], [[7k9l]], [[7k9x]], [[7ka2]], [[7ka3]], [[7vdc]] - rFBPA – Cryo EM<br /> |
**[[1fba]] – FBPA – ''Drosophila melanogaster''<br /> | **[[1fba]] – FBPA – ''Drosophila melanogaster''<br /> | ||
**[[1ojx]], [[1ok6]] – TptFBPA – ''Thermoproteus tenax''<br /> | **[[1ojx]], [[1ok6]] – TptFBPA – ''Thermoproteus tenax''<br /> | ||
| Line 33: | Line 33: | ||
**[[5u4n]] – FBPA – ''Neisseria gonorrhoeae''<br /> | **[[5u4n]] – FBPA – ''Neisseria gonorrhoeae''<br /> | ||
**[[6lnk]] – FBPA – ''Candida albicans''<br /> | **[[6lnk]] – FBPA – ''Candida albicans''<br /> | ||
| + | **[[7b2n]] – FBPA – ''Chlamydomonas reinhardtii''<br /> | ||
| + | **[[7efs]] – FBPA – ''Artemisia sieversiana''<br /> | ||
*FBPA complex | *FBPA complex | ||
| Line 74: | Line 76: | ||
**[[3n9r]], [[3n9s]], [[3c52]], [[3c56]] - HpFBPA + inhibitor<br /> | **[[3n9r]], [[3n9s]], [[3c52]], [[3c56]] - HpFBPA + inhibitor<br /> | ||
**[[3mmt]] – FBPA + FBP – ''Bartonella henselae''<br /> | **[[3mmt]] – FBPA + FBP – ''Bartonella henselae''<br /> | ||
| - | **[[7nc7]] – | + | **[[7nc7]] – BmFBPA + dihydroxyacetonephosphate – ''Bacillus methanolicus''<br /> |
| + | **[[7ncc]] – BmFBPA + imidazole + succinate derivativc<br /> | ||
| + | **[[7v6g]] - CaFBPA (mutant) + inhibitor<br /> | ||
| + | **[[7v6f]] - CaFBPA (mutant) + G3P<br /> | ||
*Fructose–6-phosphate aldolase | *Fructose–6-phosphate aldolase | ||
| Line 88: | Line 93: | ||
**[[2a4a]] – DERA – ''Plasmodium yoelii''<br /> | **[[2a4a]] – DERA – ''Plasmodium yoelii''<br /> | ||
**[[1vcv]] – DERA – ''Pyrobaculum aerophilum''<br /> | **[[1vcv]] – DERA – ''Pyrobaculum aerophilum''<br /> | ||
| - | **[[1p1x]], [[1ktn]], [[3npu]], [[3npv]], [[3npw]], [[3npx]], [[3nq2]], [[3nq8]], [[3nqv]], [[3nr0]], [[3q2d]], [[6z9j]] – EcDERA<br /> | + | **[[1p1x]], [[1ktn]], [[3npu]], [[3npv]], [[3npw]], [[3npx]], [[3nq2]], [[3nq8]], [[3nqv]], [[3nr0]], [[3q2d]], [[6z9j]], [[7p75]] – EcDERA<br /> |
**[[5emu]], [[5el1]], [[5eky]], [[6z9h]] - EcDERA (mutant)<br /> | **[[5emu]], [[5el1]], [[5eky]], [[6z9h]] - EcDERA (mutant)<br /> | ||
| - | **[[1jcj]], [[1jcl]] – EcDERA (mutant) + reaction intermediate<br /> | + | **[[1jcj]], [[1jcl]], [[7p76]] – EcDERA (mutant) + reaction intermediate<br /> |
**[[6z9i]] - EcDERA (mutant) + G3P<br /> | **[[6z9i]] - EcDERA (mutant) + G3P<br /> | ||
**[[1n7k]] – ApDERA – ''Aeropyrum pernix''<br /> | **[[1n7k]] – ApDERA – ''Aeropyrum pernix''<br /> | ||
| Line 134: | Line 139: | ||
**[[4b5t]] – EcPyrA + keto-butyrate + Co + Mg<br /> | **[[4b5t]] – EcPyrA + keto-butyrate + Co + Mg<br /> | ||
**[[4b5u]] – EcPyrA + succinic semialdehyde + Co + Mg<br /> | **[[4b5u]] – EcPyrA + succinic semialdehyde + Co + Mg<br /> | ||
| - | **[[4b5v]] – EcPyrA + pyruvate + heptanedioate derivative + Mg | + | **[[4b5v]] – EcPyrA + pyruvate + heptanedioate derivative + Mg<br /> |
| + | **[[tet8]] – AbHpai + Ca <br /> | ||
| + | **[[7etd]] – AbHpai + Ca + Zn<br /> | ||
| + | **[[7ete]] – AbHpai + Ca + Mg<br /> | ||
| + | **[[7etb]], [[7etf]] – AbHpai + pyruvate + Ca + Mn<br /> | ||
| + | **[[7et9]], [[7eta]], [[7etc]], [[7etg]], [[7eth]], [[7eti]] – AbHpai + pyruvate + Ca + Zn<br /> | ||
*Sialic acid aldolase | *Sialic acid aldolase | ||
| Line 167: | Line 177: | ||
**[[1fwr]] - EcKDPG (mutant)<br /> | **[[1fwr]] - EcKDPG (mutant)<br /> | ||
**[[5xse]] - ZmKDPG – ''Zymomonas mobilis''<br /> | **[[5xse]] - ZmKDPG – ''Zymomonas mobilis''<br /> | ||
| + | **[[8di1]] - KDPG – ''Tannerella forsythia''<br /> | ||
*KDPG complex | *KDPG complex | ||
| Line 211: | Line 222: | ||
**[[6bdd]] – KaALD + heme – ''Kordia algicida''<br /> | **[[6bdd]] – KaALD + heme – ''Kordia algicida''<br /> | ||
**[[6bde]] – KaALD (mutant) + heme <br /> | **[[6bde]] – KaALD (mutant) + heme <br /> | ||
| + | |||
| + | *Sulfofructosephosphate aldolase | ||
| + | |||
| + | **[[7ne2]] – SeSFP +SFP/DHAP – ''Salmonella enterica''<br /> | ||
*Phospho-2-dehydro-3-deoxyheptonate aldolase | *Phospho-2-dehydro-3-deoxyheptonate aldolase | ||
| Line 223: | Line 238: | ||
**[[3ocr]] – ALDII – ''Pseudomonas syringae''<br /> | **[[3ocr]] – ALDII – ''Pseudomonas syringae''<br /> | ||
| + | **[[7v8t]] – ALDII – ''Pseudomonas aeruginosa''<br /> | ||
**[[2vws]] – EcALDII<br /> | **[[2vws]] – EcALDII<br /> | ||
**[[2vwt]] – EcALDII + pyruvate <br /> | **[[2vwt]] – EcALDII + pyruvate <br /> | ||
| Line 264: | Line 280: | ||
**[[6btd]] – BtFPA – ''Bacillus thuringiensis''<br /> | **[[6btd]] – BtFPA – ''Bacillus thuringiensis''<br /> | ||
**[[6btg]] – BtFPA + DHAP <br /> | **[[6btg]] – BtFPA + DHAP <br /> | ||
| + | **[7x78f]] – FPA – ''Klebsiella pneumoniae''<br /> | ||
*Sphingosine-1-phosphate Aldolase or Sphingosine-1-phosphate lyase | *Sphingosine-1-phosphate Aldolase or Sphingosine-1-phosphate lyase | ||
| Line 311: | Line 328: | ||
*Retro-aldolase | *Retro-aldolase | ||
| - | **[[3b5l]], [[3hoj]], [[3nxf]], [[3o6y]], [[3ud6]], [[4a29]], [[4pek]], [[4pej]], [[4pa8]] – RA – artificial gene<br /> | + | **[[3b5l]], [[3hoj]], [[3nxf]], [[3o6y]], [[3ud6]], [[4a29]], [[4pek]], [[4pej]], [[4pa8]], [[7f1i]], [[7f1j]], [[7f1k]], [[7f1l]] – RA – artificial gene<br /> |
**[[4ou1]], [[4a2r]], [[4a2s]], [[4pa8]], [[5aou]], [[6tfa]] – SsRA<br /> | **[[4ou1]], [[4a2r]], [[4a2s]], [[4pa8]], [[5aou]], [[6tfa]] – SsRA<br /> | ||
**[[5an7]] – SsRA + inhibitor<br /> | **[[5an7]] – SsRA + inhibitor<br /> | ||
Revision as of 07:40, 1 September 2022
3D structures of Aldolase
Updated on 01-September-2022
