3has

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:17, 27 November 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3has' size='340' side='right'caption='[[3has]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='3has' size='340' side='right'caption='[[3has]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3has]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HAS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3has]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HAS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=OCT:N-OCTANE'>OCT</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3hao|3hao]], [[3hap|3hap]], [[3haq|3haq]], [[3har|3har]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=OCT:N-OCTANE'>OCT</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3has FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3has OCA], [https://pdbe.org/3has PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3has RCSB], [https://www.ebi.ac.uk/pdbsum/3has PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3has ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3has FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3has OCA], [https://pdbe.org/3has PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3has RCSB], [https://www.ebi.ac.uk/pdbsum/3has PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3has ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
+
[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 16: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3has_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3has_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 37: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus halobius ruber klebahn 1919]]
+
[[Category: Halobacterium salinarum]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bowie, J U]]
+
[[Category: Bowie JU]]
-
[[Category: Joh, N H]]
+
[[Category: Joh NH]]
-
[[Category: Yang, D]]
+
[[Category: Yang D]]
-
[[Category: Bacteriorhodopsin]]
+
-
[[Category: Cell membrane]]
+
-
[[Category: Chromophore]]
+
-
[[Category: Evolutionary constraint]]
+
-
[[Category: Helical membrane protein]]
+
-
[[Category: Hydrogen ion transport]]
+
-
[[Category: Integral membrane protein]]
+
-
[[Category: Ion transport]]
+
-
[[Category: Membrane]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Packing force]]
+
-
[[Category: Photoreceptor protein]]
+
-
[[Category: Proton transport]]
+
-
[[Category: Pyrrolidone carboxylic acid]]
+
-
[[Category: Receptor]]
+
-
[[Category: Retinal protein]]
+
-
[[Category: Sensory transduction]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Transport]]
+
-
[[Category: Transport protein]]
+
-
[[Category: Van der waal]]
+

Current revision

Crystal structure of bacteriorhodopsin mutant L152A crystallized from bicelles

PDB ID 3has

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3has"
Personal tools