3iav

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Current revision (10:04, 21 February 2024) (edit) (undo)
 
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<StructureSection load='3iav' size='340' side='right'caption='[[3iav]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='3iav' size='340' side='right'caption='[[3iav]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3iav]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IAV FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3iav]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IAV FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ib9|3ib9]], [[3ibb|3ibb]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pccB, SCK13.18c, SCO4926 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iav OCA], [https://pdbe.org/3iav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iav RCSB], [https://www.ebi.ac.uk/pdbsum/3iav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iav ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iav OCA], [https://pdbe.org/3iav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iav RCSB], [https://www.ebi.ac.uk/pdbsum/3iav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iav ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9X4K7_STRCH Q9X4K7_STRCH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iav ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iav ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The first committed step of fatty acid and polyketides biosynthesis, the biotin-dependent carboxylation of an acyl-CoA, is catalyzed by acyl-CoA carboxylases (ACCases) such as acetyl-CoA carboxylase (ACC) and propionyl-CoA carboxylase (PCC). ACC and PCC in Streptomyces coelicolor are homologue multisubunit complexes that can carboxylate different short chain acyl-CoAs. While ACC is able to carboxylate acetyl-, propionyl-, or butyryl-CoA with approximately the same specificity, PCC only recognizes propionyl- and butyryl-CoA as substrates. How ACC and PCC have such different specificities toward these substrates is only partially understood. To further understand the molecular basis of how the active site residues can modulate the substrate recognition, we mutated D422, N80, R456, and R457 of PccB, the catalytic beta subunit of PCC. The crystal structures of six PccB mutants and the wild type crystal structure were compared systematically to establish the sequence-structure-function relationship that correlates the observed substrate specificity toward acetyl-, propionyl-, and butyryl-CoA with active site geometry. The experimental data confirmed that D422 is a key determinant of substrate specificity, influencing not only the active site properties but further altering protein stability and causing long-range conformational changes. Mutations of N80, R456, and R457 lead to variations in the quaternary structure of the beta subunit and to a concomitant loss of enzyme activity, indicating the importance of these residues in maintaining the active protein conformation as well as a critical role in substrate binding.
 
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Crystal structures and mutational analyses of acyl-CoA carboxylase beta subunit of Streptomyces coelicolor.,Arabolaza A, Shillito ME, Lin TW, Diacovich L, Melgar M, Pham H, Amick D, Gramajo H, Tsai SC Biochemistry. 2010 Aug 31;49(34):7367-76. PMID:20690600<ref>PMID:20690600</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3iav" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Arabolaza, A]]
 
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[[Category: Diacovich, L]]
 
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[[Category: Lin, T W]]
 
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[[Category: Melgar, M M]]
 
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[[Category: Mitchell, D L]]
 
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[[Category: Pham, H]]
 
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[[Category: Shillito, E M]]
 
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[[Category: Acc]]
 
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[[Category: Accase]]
 
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[[Category: Acyl-coa]]
 
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[[Category: Acyl-coa carboxylase]]
 
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[[Category: Beta subunit]]
 
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[[Category: Biosynthetic protein]]
 
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[[Category: Biotin]]
 
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[[Category: Carboxylase]]
 
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[[Category: Carboxyltransferase]]
 
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[[Category: Ct]]
 
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[[Category: Fa]]
 
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[[Category: Fatty acid]]
 
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[[Category: Fatty acid synthase]]
 
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[[Category: Pcc]]
 
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[[Category: Pccase]]
 
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[[Category: Pccb]]
 
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[[Category: Pk]]
 
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[[Category: Polyketide]]
 
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[[Category: Polyketide synthase]]
 
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[[Category: Propionyl-coa]]
 
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[[Category: Streptomce]]
 
[[Category: Streptomyces coelicolor]]
[[Category: Streptomyces coelicolor]]
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[[Category: Arabolaza A]]
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[[Category: Diacovich L]]
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[[Category: Lin T-W]]
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[[Category: Melgar MM]]
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[[Category: Mitchell DL]]
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[[Category: Pham H]]
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[[Category: Shillito EM]]

Current revision

Propionyl-CoA Carboxylase Beta Subunit, D422V

PDB ID 3iav

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