2lal

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Current revision (09:04, 21 February 2024) (edit) (undo)
 
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<StructureSection load='2lal' size='340' side='right'caption='[[2lal]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='2lal' size='340' side='right'caption='[[2lal]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2lal]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cicer_lens Cicer lens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LAL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LAL FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2lal]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lens_culinaris Lens culinaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LAL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LAL FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lal FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lal OCA], [https://pdbe.org/2lal PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lal RCSB], [https://www.ebi.ac.uk/pdbsum/2lal PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lal ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lal FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lal OCA], [https://pdbe.org/2lal PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lal RCSB], [https://www.ebi.ac.uk/pdbsum/2lal PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lal ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/LEC_LENCU LEC_LENCU]] D-mannose specific lectin (By similarity).
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[https://www.uniprot.org/uniprot/LEC_LENCU LEC_LENCU] D-mannose specific lectin (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2lal ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2lal ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The structures of two crystal forms of lentil lectin are determined and refined at high resolution. Orthorhombic lentil lectin is refined at 1.80 A resolution to an R-factor of 0.184 and monoclinic lentil lectin at 1.75 A resolution to an R-factor of 0.175. These two structures are compared to each other and to the other available legume lectin structures. The monosaccharide binding pocket of each lectin monomer contains a tightly bound phosphate ion. This phosphate makes hydrogen bonding contacts with Asp-81 beta, Gly-99 beta, and Asn-125 beta, three residues that are highly conserved in most of the known legume lectin sequences and essential for monosaccharide recognition in all legume lectin crystal structures described thus far. A detailed analysis of the composition and properties of the hydrophobic contact network and hydrophobic nuclei in lentil lectin is presented. Contact map calculations reveal that dense clusters of nonpolar as well as polar side chains play a major role in secondary structure packing. This is illustrated by a large cluster of 24 mainly hydrophobic amino acids that is responsible for the majority of packing interactions between the two beta-sheets. Another series of four smaller and less hydrophobic clusters is found to mediate the packing of a number of loop structures upon the front sheet. A very dense, but not very conserved cluster is found to stabilize the transition metal binding site. The highly conserved and invariant nonpolar residues are distributed asymmetrically over the protein.
 
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Structural analysis of two crystal forms of lentil lectin at 1.8 A resolution.,Loris R, Van Overberge D, Dao-Thi MH, Poortmans F, Maene N, Wyns L Proteins. 1994 Dec;20(4):330-46. PMID:7731952<ref>PMID:7731952</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 2lal" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Cicer lens]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Lisgarten, J]]
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[[Category: Lens culinaris]]
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[[Category: Loris, R]]
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[[Category: Lisgarten J]]
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[[Category: Maes, D]]
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[[Category: Loris R]]
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[[Category: Pickersgill, R]]
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[[Category: Maes D]]
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[[Category: Steyaert, J]]
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[[Category: Pickersgill R]]
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[[Category: Wyns, L]]
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[[Category: Steyaert J]]
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[[Category: Lectin]]
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[[Category: Wyns L]]

Current revision

CRYSTAL STRUCTURE DETERMINATION AND REFINEMENT AT 2.3 ANGSTROMS RESOLUTION OF THE LENTIL LECTIN

PDB ID 2lal

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