This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6ylz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:30, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6ylz' size='340' side='right'caption='[[6ylz]], [[Resolution|resolution]] 1.56&Aring;' scene=''>
<StructureSection load='6ylz' size='340' side='right'caption='[[6ylz]], [[Resolution|resolution]] 1.56&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6ylz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YLZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YLZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6ylz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YLZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YLZ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.558&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pdxH, b1638, JW1630 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyridoxal_5'-phosphate_synthase Pyridoxal 5'-phosphate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.5 1.4.3.5] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ylz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ylz OCA], [https://pdbe.org/6ylz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ylz RCSB], [https://www.ebi.ac.uk/pdbsum/6ylz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ylz ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ylz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ylz OCA], [https://pdbe.org/6ylz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ylz RCSB], [https://www.ebi.ac.uk/pdbsum/6ylz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ylz ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/PDXH_ECOLI PDXH_ECOLI]] Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).[HAMAP-Rule:MF_01629]
+
[https://www.uniprot.org/uniprot/PDXH_ECOLI PDXH_ECOLI] Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).[HAMAP-Rule:MF_01629]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 6ylz" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6ylz" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Pyridoxine 5'-phosphate oxidase|Pyridoxine 5'-phosphate oxidase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli K-12]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Pyridoxal 5'-phosphate synthase]]
+
[[Category: Barile A]]
-
[[Category: Barile, A]]
+
[[Category: Battista T]]
-
[[Category: Battista, T]]
+
[[Category: Fiorillo A]]
-
[[Category: Fiorillo, A]]
+
[[Category: Ilari A]]
-
[[Category: Ilari, A]]
+
[[Category: Sularea M]]
-
[[Category: Sularea, M]]
+
[[Category: Tramonti A]]
-
[[Category: Tramonti, A]]
+
-
[[Category: Flavoprotein]]
+
-
[[Category: Oxidase]]
+
-
[[Category: Pyridoxal 5'-phosphate]]
+
-
[[Category: Vitamine b6 metabolism]]
+

Current revision

X-ray structure of the K72I,Y129F,R133L, H199A quadruple mutant of PNP-oxidase from E. coli

PDB ID 6ylz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6ylz"
Personal tools