1zib
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1zib]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_cycloclastes Achromobacter cycloclastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZIB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZIB FirstGlance]. <br> | <table><tr><td colspan='2'>[[1zib]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_cycloclastes Achromobacter cycloclastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZIB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZIB FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zib OCA], [https://pdbe.org/1zib PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zib RCSB], [https://www.ebi.ac.uk/pdbsum/1zib PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zib ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zib OCA], [https://pdbe.org/1zib PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zib RCSB], [https://www.ebi.ac.uk/pdbsum/1zib PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zib ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/AZUP_ACHCY AZUP_ACHCY] This soluble electron transfer copper protein is required for the inactivation of copper-containing nitrite reductase in the presence of oxygen. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zib ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zib ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | New crystals of a blue copper protein, pseudoazurin from denitrifier Achromobacter cycloclastes IAM1013, have been obtained by means of vapor diffusion with ammonium sulfate as a precipitant at pH 6.0 and 4 degrees C. The crystals belong to the orthorhombic system, space group P2(1)2(1)2(1), with unit cell dimensions of a = 56.69(2), b = 61.53(2), and c = 30.20(1) A. The asymmetric unit includes one molecule of pseudoazurin with a Vm value of 2.04 A3/Da. The crystals are so stable against X-ray irradiation that a complete data set up to 1.54 A has been collected using a single native crystal. Solution of the structure was performed by means of the Patterson search techniques, and the current crystallographic R-factor is 17.5% at 3.0 A resolution. Refinement at higher resolution is in progress. | ||
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| - | Crystallization and preliminary X-ray studies on pseudoazurin from Achromobacter cycloclastes IAM1013.,Inoue T, Nishio N, Kai Y, Harada S, Ohshiro Y, Suzuki S, Kohzuma T, Shidara S, Iwasaki H J Biochem. 1993 Dec;114(6):761-2. PMID:8138527<ref>PMID:8138527</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 1zib" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Pseudoazurin|Pseudoazurin]] | *[[Pseudoazurin|Pseudoazurin]] | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Achromobacter cycloclastes]] | [[Category: Achromobacter cycloclastes]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Hamanaka | + | [[Category: Hamanaka S]] |
| - | [[Category: Harada | + | [[Category: Harada S]] |
| - | [[Category: Inoue | + | [[Category: Inoue T]] |
| - | [[Category: Iwasaki | + | [[Category: Iwasaki H]] |
| - | [[Category: Kai | + | [[Category: Kai Y]] |
| - | [[Category: Kohzuma | + | [[Category: Kohzuma T]] |
| - | [[Category: Nishio | + | [[Category: Nishio N]] |
| - | [[Category: Shidara | + | [[Category: Shidara S]] |
| - | [[Category: Shimomura | + | [[Category: Shimomura T]] |
| - | [[Category: Suzuki | + | [[Category: Suzuki S]] |
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Current revision
REDUCED PSEUDOAZURIN
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Categories: Achromobacter cycloclastes | Large Structures | Hamanaka S | Harada S | Inoue T | Iwasaki H | Kai Y | Kohzuma T | Nishio N | Shidara S | Shimomura T | Suzuki S
