2y1j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:43, 20 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2y1j' size='340' side='right'caption='[[2y1j]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
<StructureSection load='2y1j' size='340' side='right'caption='[[2y1j]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2y1j]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y1J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y1J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2y1j]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y1J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y1J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=QBT:[(2R,3S,5R)-3-HYDROXY-5-[(5S)-5-METHYL-2,4-DIOXO-1,3-DIAZINAN-1-YL]OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>QBT</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=QBT:[(2R,3S,5R)-3-HYDROXY-5-[(5S)-5-METHYL-2,4-DIOXO-1,3-DIAZINAN-1-YL]OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>QBT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2y1i|2y1i]]</div></td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y1j OCA], [https://pdbe.org/2y1j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y1j RCSB], [https://www.ebi.ac.uk/pdbsum/2y1j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y1j ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y1j OCA], [https://pdbe.org/2y1j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y1j RCSB], [https://www.ebi.ac.uk/pdbsum/2y1j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y1j ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/E1C9K5_GEOSE E1C9K5_GEOSE]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 2y1j" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2y1j" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 12980]]
+
[[Category: Geobacillus stearothermophilus]]
-
[[Category: DNA-directed DNA polymerase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Carell, T]]
+
[[Category: Synthetic construct]]
-
[[Category: Heil, K]]
+
[[Category: Carell T]]
-
[[Category: Kneuttinger, A C]]
+
[[Category: Heil K]]
-
[[Category: Mueller, M]]
+
[[Category: Kneuttinger AC]]
-
[[Category: Schneider, S]]
+
[[Category: Mueller M]]
-
[[Category: 5-thyminyl-5]]
+
[[Category: Schneider S]]
-
[[Category: 6-dihydrothymine]]
+
-
[[Category: Dna repair]]
+
-
[[Category: Photolesion]]
+
-
[[Category: Spore photoproduct]]
+
-
[[Category: Transferase-dna complex]]
+
-
[[Category: Uv lesion]]
+

Current revision

CRYSTAL STRUCTURE OF A R-DIASTEREOMER ANALOGUE OF THE SPORE PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS

PDB ID 2y1j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2y1j"
Personal tools