2bnu

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Current revision (13:48, 13 December 2023) (edit) (undo)
 
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<StructureSection load='2bnu' size='340' side='right'caption='[[2bnu]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='2bnu' size='340' side='right'caption='[[2bnu]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2bnu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BNU FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2bnu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BNU FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bnu OCA], [https://pdbe.org/2bnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bnu RCSB], [https://www.ebi.ac.uk/pdbsum/2bnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bnu ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bnu OCA], [https://pdbe.org/2bnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bnu RCSB], [https://www.ebi.ac.uk/pdbsum/2bnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bnu ProSAT]</span></td></tr>
</table>
</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/TRAC_HUMAN TRAC_HUMAN] TCR-alpha-beta-positive T-cell deficiency. The disease is caused by variants affecting the gene represented in this entry.
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== Function ==
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[https://www.uniprot.org/uniprot/TVA21_HUMAN TVA21_HUMAN] V region of the variable domain of T cell receptor (TR) alpha chain that participates in the antigen recognition (PubMed:24600447). Alpha-beta T cell receptors are antigen specific receptors which are essential to the immune response and are present on the cell surface of T lymphocytes. Recognize peptide-major histocompatibility (MH) (pMH) complexes that are displayed by antigen presenting cells (APC), a prerequisite for efficient T cell adaptive immunity against pathogens (PubMed:25493333). Binding of alpha-beta TR to pMH complex initiates TR-CD3 clustering on the cell surface and intracellular activation of LCK that phosphorylates the ITAM motifs of CD3G, CD3D, CD3E and CD247 enabling the recruitment of ZAP70. In turn ZAP70 phosphorylates LAT, which recruits numerous signaling molecules to form the LAT signalosome. The LAT signalosome propagates signal branching to three major signaling pathways, the calcium, the mitogen-activated protein kinase (MAPK) kinase and the nuclear factor NF-kappa-B (NF-kB) pathways, leading to the mobilization of transcription factors that are critical for gene expression and essential for T cell growth and differentiation (PubMed:23524462). The T cell repertoire is generated in the thymus, by V-(D)-J rearrangement. This repertoire is then shaped by intrathymic selection events to generate a peripheral T cell pool of self-MH restricted, non-autoaggressive T cells. Post-thymic interaction of alpha-beta TR with the pMH complexes shapes TR structural and functional avidity (PubMed:15040585).<ref>PMID:15040585</ref> <ref>PMID:23524462</ref> <ref>PMID:24600447</ref> <ref>PMID:25493333</ref> [https://www.uniprot.org/uniprot/TRAC_HUMAN TRAC_HUMAN] Constant region of T cell receptor (TR) alpha chain (PubMed:24600447). Alpha-beta T cell receptors are antigen specific receptors which are essential to the immune response and are present on the cell surface of T lymphocytes. Recognize peptide-major histocompatibility (MH) (pMH) complexes that are displayed by antigen presenting cells (APC), a prerequisite for efficient T cell adaptive immunity against pathogens (PubMed:25493333). Binding of alpha-beta TR to pMH complex initiates TR-CD3 clustering on the cell surface and intracellular activation of LCK that phosphorylates the ITAM motifs of CD3G, CD3D, CD3E and CD247 enabling the recruitment of ZAP70. In turn, ZAP70 phosphorylates LAT, which recruits numerous signaling molecules to form the LAT signalosome. The LAT signalosome propagates signal branching to three major signaling pathways, the calcium, the mitogen-activated protein kinase (MAPK) kinase and the nuclear factor NF-kappa-B (NF-kB) pathways, leading to the mobilization of transcription factors that are critical for gene expression and essential for T cell growth and differentiation (PubMed:23524462). The T cell repertoire is generated in the thymus, by V-(D)-J rearrangement. This repertoire is then shaped by intrathymic selection events to generate a peripheral T cell pool of self-MH restricted, non-autoaggressive T cells. Post-thymic interaction of alpha-beta TR with the pMH complexes shapes TR structural and functional avidity (PubMed:15040585).<ref>PMID:15040585</ref> <ref>PMID:23524462</ref> <ref>PMID:24600447</ref> <ref>PMID:25493333</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Bossi, G]]
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[[Category: Bossi G]]
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[[Category: Boultier, J M]]
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[[Category: Boultier JM]]
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[[Category: Cerundolo, V]]
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[[Category: Cerundolo V]]
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[[Category: Chen, J L]]
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[[Category: Chen J-L]]
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[[Category: Choi, E M.L]]
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[[Category: Choi EML]]
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[[Category: Dunbar, P R]]
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[[Category: Dunbar PR]]
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[[Category: Esnouf, R M]]
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[[Category: Esnouf RM]]
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[[Category: Griffiths, G]]
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[[Category: Griffiths G]]
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[[Category: Held, G]]
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[[Category: Held G]]
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[[Category: Jackobsen, B K]]
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[[Category: Jackobsen BK]]
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[[Category: Jones, E Y]]
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[[Category: Jones EY]]
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[[Category: Lissin, N M]]
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[[Category: Lissin NM]]
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[[Category: Merwe, P A.Van Der]]
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[[Category: Renner C]]
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[[Category: Renner, C]]
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[[Category: Rizkallah PJ]]
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[[Category: Rizkallah, P J]]
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[[Category: Sami M]]
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[[Category: Sami, M]]
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[[Category: Sewell A]]
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[[Category: Sewell, A]]
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[[Category: Stewart-Jones G]]
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[[Category: Stewart-Jones, G]]
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[[Category: Van Der Merwe PA]]
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[[Category: Wooldridge, L]]
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[[Category: Wooldridge L]]
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[[Category: Immune system-receptor complex]]
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[[Category: Immune system/receptor]]
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[[Category: Immunoglobulin domain]]
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[[Category: Receptor]]
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[[Category: Superagonist peptide t-cell vaccine]]
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[[Category: T-cell]]
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[[Category: Transmembrane]]
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Current revision

Structural and kinetic basis for heightened immunogenicity of T cell vaccines

PDB ID 2bnu

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