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2d5r
From Proteopedia
(Difference between revisions)
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<StructureSection load='2d5r' size='340' side='right'caption='[[2d5r]], [[Resolution|resolution]] 2.50Å' scene=''> | <StructureSection load='2d5r' size='340' side='right'caption='[[2d5r]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2d5r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2d5r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5R FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5r OCA], [https://pdbe.org/2d5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5r RCSB], [https://www.ebi.ac.uk/pdbsum/2d5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5r ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5r OCA], [https://pdbe.org/2d5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5r RCSB], [https://www.ebi.ac.uk/pdbsum/2d5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5r ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/CNOT7_HUMAN CNOT7_HUMAN] Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity). | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5r ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5r ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | The Tob/BTG family is a group of antiproliferative proteins containing two highly homologous regions, Box A and Box B. These proteins all associate with CCR4-associated factor 1 (Caf1), which belongs to the ribonuclease D (RNase D) family of deadenylases and is a component of the CCR4-Not deadenylase complex. Here we determined the crystal structure of the complex of the N-terminal region of Tob and human Caf1 (hCaf1). Tob exhibited a novel fold, whereas hCaf1 most closely resembled the catalytic domain of yeast Pop2 and human poly(A)-specific ribonuclease. Interestingly, the association of hCaf1 was mediated by both Box A and Box B of Tob. Cell growth assays using both wild-type and mutant proteins revealed that deadenylase activity of Caf1 is not critical but complex formation is crucial to cell growth inhibition. Caf1 tethers Tob to the CCR4-Not deadenylase complex, and thereby Tob gathers several factors at its C-terminal region, such as poly(A)-binding proteins, to exert antiproliferative activity. | ||
| - | |||
| - | Structural basis for the antiproliferative activity of the Tob-hCaf1 complex.,Horiuchi M, Takeuchi K, Noda N, Muroya N, Suzuki T, Nakamura T, Kawamura-Tsuzuku J, Takahasi K, Yamamoto T, Inagaki F J Biol Chem. 2009 May 8;284(19):13244-55. Epub 2009 Mar 10. PMID:19276069<ref>PMID:19276069</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 2d5r" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Horiuchi | + | [[Category: Horiuchi M]] |
| - | [[Category: Ikematsu | + | [[Category: Ikematsu N]] |
| - | [[Category: Inagaki | + | [[Category: Inagaki F]] |
| - | [[Category: Kawamura-Tsuzuku | + | [[Category: Kawamura-Tsuzuku J]] |
| - | [[Category: Muroya | + | [[Category: Muroya N]] |
| - | [[Category: Nakamura | + | [[Category: Nakamura T]] |
| - | [[Category: Nishida | + | [[Category: Nishida M]] |
| - | [[Category: Suzuki | + | [[Category: Suzuki NN]] |
| - | [[Category: Takahasi | + | [[Category: Takahasi K]] |
| - | [[Category: Yamamoto | + | [[Category: Yamamoto T]] |
| - | [[Category: Yoshida | + | [[Category: Yoshida Y]] |
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of a Tob-hCaf1 Complex
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Categories: Homo sapiens | Large Structures | Horiuchi M | Ikematsu N | Inagaki F | Kawamura-Tsuzuku J | Muroya N | Nakamura T | Nishida M | Suzuki NN | Takahasi K | Yamamoto T | Yoshida Y

