This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dg1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 25 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2dg1' size='340' side='right'caption='[[2dg1]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
<StructureSection load='2dg1' size='340' side='right'caption='[[2dg1]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2dg1]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DG1 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2dg1]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DG1 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2dg0|2dg0]], [[1v04|1v04]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/1,4-lactonase 1,4-lactonase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.25 3.1.1.25] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dg1 OCA], [https://pdbe.org/2dg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dg1 RCSB], [https://www.ebi.ac.uk/pdbsum/2dg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dg1 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dg1 OCA], [https://pdbe.org/2dg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dg1 RCSB], [https://www.ebi.ac.uk/pdbsum/2dg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dg1 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DRP35_STAAM DRP35_STAAM] Exhibits lactonase activity. Acts in cells with perturbed membrane integrity and is possibly related to the membrane homeostasis (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 1,4-lactonase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Morikawa, K]]
+
[[Category: Staphylococcus aureus]]
-
[[Category: Ohki, Y]]
+
[[Category: Morikawa K]]
-
[[Category: Ohta, T]]
+
[[Category: Ohki Y]]
-
[[Category: Tanaka, I]]
+
[[Category: Ohta T]]
-
[[Category: Tanaka, Y]]
+
[[Category: Tanaka I]]
-
[[Category: Watanabe, N]]
+
[[Category: Tanaka Y]]
-
[[Category: Yao, M]]
+
[[Category: Watanabe N]]
-
[[Category: Beta propeller]]
+
[[Category: Yao M]]
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+

PDB ID 2dg1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools