2z3t

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Current revision (13:55, 13 March 2024) (edit) (undo)
 
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<StructureSection load='2z3t' size='340' side='right'caption='[[2z3t]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='2z3t' size='340' side='right'caption='[[2z3t]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2z3t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._tp-a0274 Streptomyces sp. tp-a0274]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z3T FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2z3t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._TP-A0274 Streptomyces sp. TP-A0274]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z3T FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2z3u|2z3u]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">staP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=171258 Streptomyces sp. TP-A0274])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z3t OCA], [https://pdbe.org/2z3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z3t RCSB], [https://www.ebi.ac.uk/pdbsum/2z3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z3t ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z3t OCA], [https://pdbe.org/2z3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z3t RCSB], [https://www.ebi.ac.uk/pdbsum/2z3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z3t ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q83WG3_9ACTN Q83WG3_9ACTN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z3t ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z3t ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Staurosporine isolated from Streptomyces sp. TP-A0274 is a member of the family of indolocarbazole alkaloids that exhibit strong antitumor activity. A key step in staurosporine biosynthesis is the formation of the indolocarbazole core by intramolecular C-C bond formation and oxidative decarboxylation of chromopyrrolic acid (CPA) catalyzed by cytochrome P450 StaP (StaP, CYP245A1). In this study, we report x-ray crystal structures of CPA-bound and -free forms of StaP. Upon substrate binding, StaP adopts a more ordered conformation, and conformational rearrangements of residues in the active site are also observed. Hydrogen-bonding interactions of two carboxyl groups and T-shaped pi-pi interactions with indole rings hold the substrate in the substrate-binding cavity with a conformation perpendicular to the heme plane. Based on the crystal structure of StaP-CPA complex, we propose that C-C bond formation occurs through an indole cation radical intermediate that is equivalent to cytochrome c peroxidase compound I [Sivaraja M, Goodin DB, Smith M, Hoffman BM (1989) Science 245:738-740]. The subsequent oxidative decarboxylation reaction is also discussed based on the crystal structure. Our crystallographic study shows the first crystal structures of enzymes involved in formation of the indolocarbazole core and provides valuable insights into the process of staurosporine biosynthesis, combinatorial biosynthesis of indolocarbazoles, and the diversity of cytochrome P450 chemistry.
 
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Crystal structures and catalytic mechanism of cytochrome P450 StaP that produces the indolocarbazole skeleton.,Makino M, Sugimoto H, Shiro Y, Asamizu S, Onaka H, Nagano S Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11591-6. Epub 2007 Jul 2. PMID:17606921<ref>PMID:17606921</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 2z3t" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Streptomyces sp. tp-a0274]]
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[[Category: Streptomyces sp. TP-A0274]]
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[[Category: Asamizu, S]]
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[[Category: Asamizu S]]
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[[Category: Makino, M]]
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[[Category: Makino M]]
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[[Category: Nagano, S]]
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[[Category: Nagano S]]
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[[Category: Onaka, H]]
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[[Category: Onaka H]]
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[[Category: Shiro, Y]]
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[[Category: Shiro Y]]
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[[Category: Sugimoto, H]]
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[[Category: Sugimoto H]]
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[[Category: Cytochrome p450]]
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[[Category: Heme-enzyme]]
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[[Category: Monoxygenase]]
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[[Category: Oxidoreductase]]
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[[Category: Oxydoreductase]]
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Current revision

Crystal Structure of Substrate Free Cytochrome P450 StaP (CYP245A1)

PDB ID 2z3t

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