3a8r
From Proteopedia
(Difference between revisions)
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<StructureSection load='3a8r' size='340' side='right'caption='[[3a8r]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='3a8r' size='340' side='right'caption='[[3a8r]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3a8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3a8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A8R FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a8r OCA], [https://pdbe.org/3a8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a8r RCSB], [https://www.ebi.ac.uk/pdbsum/3a8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a8r ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a8r OCA], [https://pdbe.org/3a8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a8r RCSB], [https://www.ebi.ac.uk/pdbsum/3a8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a8r ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/RBOHB_ORYSJ RBOHB_ORYSJ] Calcium-dependent NADPH oxidase that generates superoxide. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a8r ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a8r ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Plant NADPH oxidases (Rboh, for respiratory burst oxidase homolog) produce reactive oxygen species that are key regulators of various cellular events including plant innate immunity. Rbohs possess a highly conserved cytoplasmic N-terminal region containing two EF-hand motifs that regulate Rboh activity. Rice (Oryza sativa) RbohB (OsRbohB) is regulated by the direct binding of a small GTPase (Rac1) to this regulatory region as well as by Ca(2+) binding to the EF-hands. Here, we present the atomic structure of the N-terminal region of OsRbohB. The structure reveals that OsRbohB forms a unique dimer stabilized by swapping the EF-hand motifs. We identified two additional EF-hand-like motifs that were not predicted from sequence data so far. These EF-hand-like motifs together with the swapped EF-hands form a structure similar to that found in calcineurin B. We observed conformational changes mediated by Ca(2+) binding to only one EF-hand. Structure-based in vitro pulldown assays and NMR titration experiments defined the OsRac1 binding interface within the coiled-coil region created by swapping the EF-hands. In addition, we demonstrate a direct intramolecular interaction between the N and C terminus, and that the complete N-terminal cytoplasmic region is required for this interaction. The structural features and intramolecular interactions characterized here might be common elements shared by Rbohs that contribute to the regulation of reactive oxygen species production. | ||
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- | Structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications.,Oda T, Hashimoto H, Kuwabara N, Akashi S, Hayashi K, Kojima C, Wong HL, Kawasaki T, Shimamoto K, Sato M, Shimizu T J Biol Chem. 2010 Jan 8;285(2):1435-45. Epub 2009 Oct 28. PMID:19864426<ref>PMID:19864426</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 3a8r" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Japanese rice]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Akashi | + | [[Category: Oryza sativa Japonica Group]] |
- | [[Category: Hashimoto | + | [[Category: Akashi S]] |
- | [[Category: Hayashi | + | [[Category: Hashimoto H]] |
- | [[Category: Kawasaki | + | [[Category: Hayashi K]] |
- | [[Category: Kojima | + | [[Category: Kawasaki T]] |
- | [[Category: Kuwabara | + | [[Category: Kojima C]] |
- | [[Category: Oda | + | [[Category: Kuwabara N]] |
- | [[Category: Sato | + | [[Category: Oda T]] |
- | [[Category: Shimamoto | + | [[Category: Sato M]] |
- | [[Category: Shimizu | + | [[Category: Shimamoto K]] |
- | [[Category: Wong | + | [[Category: Shimizu T]] |
- | + | [[Category: Wong HL]] | |
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Current revision
The structure of the N-terminal regulatory domain of a plant NADPH oxidase
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Categories: Large Structures | Oryza sativa Japonica Group | Akashi S | Hashimoto H | Hayashi K | Kawasaki T | Kojima C | Kuwabara N | Oda T | Sato M | Shimamoto K | Shimizu T | Wong HL