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3aiw

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Current revision (15:47, 4 October 2023) (edit) (undo)
 
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<StructureSection load='3aiw' size='340' side='right'caption='[[3aiw]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='3aiw' size='340' side='right'caption='[[3aiw]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3aiw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rye Rye]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AIW FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3aiw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Secale_cereale Secale cereale]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AIW FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DNF:2,4-DINITROPHENOL'>DNF</scene>, <scene name='pdbligand=G2F:2-DEOXY-2-FLUORO-ALPHA-D-GLUCOPYRANOSE'>G2F</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2dga|2dga]], [[3aiq|3aiq]], [[3air|3air]], [[3ais|3ais]], [[3aiu|3aiu]], [[3aiv|3aiv]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DNF:2,4-DINITROPHENOL'>DNF</scene>, <scene name='pdbligand=G2F:2-DEOXY-2-FLUORO-ALPHA-D-GLUCOPYRANOSE'>G2F</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ScGlu ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4550 Rye])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aiw OCA], [https://pdbe.org/3aiw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aiw RCSB], [https://www.ebi.ac.uk/pdbsum/3aiw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aiw ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aiw OCA], [https://pdbe.org/3aiw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aiw RCSB], [https://www.ebi.ac.uk/pdbsum/3aiw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aiw ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/HGGL_SECCE HGGL_SECCE]] Involved in defense of young plant parts against pests via the production of benzoxazolinones (hydroxamic acids) from hydroxamic acid glucosides. The preferred substrate is DIBOA-beta-D-glucoside. Can also use esculin and genistein glucoside as substrates, but no activity with salicin, p-nitrophenyl-alpha-glucoside or substrates related to cell wall components.<ref>PMID:10773341</ref> [PDB:3AIU]
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[https://www.uniprot.org/uniprot/HGGL_SECCE HGGL_SECCE] Involved in defense of young plant parts against pests via the production of benzoxazolinones (hydroxamic acids) from hydroxamic acid glucosides. The preferred substrate is DIBOA-beta-D-glucoside. Can also use esculin and genistein glucoside as substrates, but no activity with salicin, p-nitrophenyl-alpha-glucoside or substrates related to cell wall components.<ref>PMID:10773341</ref> [PDB:3AIU]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Beta-glucosidase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Rye]]
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[[Category: Secale cereale]]
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[[Category: Miyamoto, T]]
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[[Category: Miyamoto T]]
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[[Category: Nakamura, C]]
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[[Category: Nakamura C]]
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[[Category: Sue, M]]
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[[Category: Sue M]]
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[[Category: Yajima, S]]
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[[Category: Yajima S]]
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[[Category: Hydrolase]]
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[[Category: Tim barrel]]
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Current revision

Crystal structure of beta-glucosidase in rye complexed with 2-deoxy-2-fluoroglucoside and dinitrophenol

PDB ID 3aiw

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