This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bdh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:07, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3bdh' size='340' side='right'caption='[[3bdh]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
<StructureSection load='3bdh' size='340' side='right'caption='[[3bdh]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3bdh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3bdh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3bdf|3bdf]], [[3bdg|3bdg]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">phoA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Alkaline_phosphatase Alkaline phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.1 3.1.3.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdh OCA], [https://pdbe.org/3bdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdh RCSB], [https://www.ebi.ac.uk/pdbsum/3bdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdh OCA], [https://pdbe.org/3bdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdh RCSB], [https://www.ebi.ac.uk/pdbsum/3bdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdh ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PPB_ECOLI PPB_ECOLI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 25: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Alkaline phosphatase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Grigg, J C]]
+
[[Category: Grigg JC]]
-
[[Category: Murphy, M E]]
+
[[Category: Murphy ME]]
-
[[Category: Bacterial alkaline phosphatase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Magnesium]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Periplasm]]
+
-
[[Category: Phosphoprotein]]
+
-
[[Category: Zinc]]
+

Current revision

Crystal structure of zinc-deficient wild-type E. coli alkaline phosphatase

PDB ID 3bdh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools