3bdr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:47, 30 October 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3bdr' size='340' side='right'caption='[[3bdr]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='3bdr' size='340' side='right'caption='[[3bdr]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3bdr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3bdr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ycf58, tll1699 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32046 PCC 6301])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdr OCA], [https://pdbe.org/3bdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdr RCSB], [https://www.ebi.ac.uk/pdbsum/3bdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdr ProSAT], [https://www.topsan.org/Proteins/NESGC/3bdr TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdr OCA], [https://pdbe.org/3bdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdr RCSB], [https://www.ebi.ac.uk/pdbsum/3bdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdr ProSAT], [https://www.topsan.org/Proteins/NESGC/3bdr TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/CPXS_THEEB CPXS_THEEB]] Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins (By similarity).
+
[https://www.uniprot.org/uniprot/CPXS_THEVB CPXS_THEVB] Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.[HAMAP-Rule:MF_01459]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 16: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdr_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdr_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 24: Line 23:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Pcc 6301]]
+
[[Category: Synechococcus elongatus]]
-
[[Category: Acton, T B]]
+
[[Category: Acton TB]]
-
[[Category: Baran, M C]]
+
[[Category: Baran MC]]
-
[[Category: Cunningham, K]]
+
[[Category: Cunningham K]]
-
[[Category: Forouhar, F]]
+
[[Category: Forouhar F]]
-
[[Category: Hunt, J F]]
+
[[Category: Hunt JF]]
-
[[Category: Janjua, H]]
+
[[Category: Janjua H]]
-
[[Category: Kuzin, A P]]
+
[[Category: Kuzin AP]]
-
[[Category: Liu, J]]
+
[[Category: Liu J]]
-
[[Category: Ma, L C]]
+
[[Category: Ma L-C]]
-
[[Category: Montelione, G T]]
+
[[Category: Montelione GT]]
-
[[Category: Structural genomic]]
+
[[Category: Rost B]]
-
[[Category: Rost, B]]
+
[[Category: Seetharaman J]]
-
[[Category: Seetharaman, J]]
+
[[Category: Su M]]
-
[[Category: Su, M]]
+
[[Category: Tong L]]
-
[[Category: Tong, L]]
+
[[Category: Wang D]]
-
[[Category: Wang, D]]
+
[[Category: Xiao R]]
-
[[Category: Xiao, R]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Q8di91]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Ycf58]]
+

Current revision

Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13.

PDB ID 3bdr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bdr"
Personal tools