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1w8x

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Current revision (18:06, 18 October 2023) (edit) (undo)
 
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<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution|resolution]] 4.20&Aring;' scene=''>
<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution|resolution]] 4.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_PRD1 Enterobacteria phage PRD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1cjd|1cjd]], [[1gw7|1gw7]], [[1gw8|1gw8]], [[1hb5|1hb5]], [[1hb7|1hb7]], [[1hb9|1hb9]], [[1hqn|1hqn]], [[1hx6|1hx6]]</div></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.2&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [https://pdbe.org/1w8x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [https://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [https://pdbe.org/1w8x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [https://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/VP16_BPPRD VP16_BPPRD]] protein of the infection vertex complex, which increases the vertex stability. Anchors the vertex structure to the viral membrane. Essential for viral infectivity.<ref>PMID:15331712</ref> [[https://www.uniprot.org/uniprot/CAPSD_BPPRD CAPSD_BPPRD]] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins. [[https://www.uniprot.org/uniprot/VP31_BPPRD VP31_BPPRD]] In association with P2 and trimeric P5, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity. [[https://www.uniprot.org/uniprot/VP30_BPPRD VP30_BPPRD]] Minor capsid protein essential for stable capsid assembly of complete particles.<ref>PMID:11697904</ref>
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[https://www.uniprot.org/uniprot/CAPSD_BPPRD CAPSD_BPPRD] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
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[[Category: Enterobacteria phage prd1]]
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[[Category: Enterobacteria phage PRD1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Abrescia, N G.A]]
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[[Category: Abrescia NGA]]
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[[Category: Bamford, D H]]
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[[Category: Bamford DH]]
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[[Category: Bamford, J K.H]]
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[[Category: Bamford JKH]]
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[[Category: Burnett, R M]]
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[[Category: Burnett RM]]
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[[Category: Butcher, S J]]
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[[Category: Butcher SJ]]
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[[Category: Cockburn, J J.B]]
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[[Category: Cockburn JJB]]
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[[Category: Diprose, J M]]
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[[Category: Diprose JM]]
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[[Category: Fuller, S D]]
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[[Category: Fuller SD]]
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[[Category: Grimes, J M]]
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[[Category: Grimes JM]]
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[[Category: Martin, C San]]
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[[Category: San Martin C]]
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[[Category: Stuart, D I]]
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[[Category: Stuart DI]]
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[[Category: Sutton, G C]]
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[[Category: Sutton GC]]
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[[Category: Icosahedral virus]]
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[[Category: P16 membrane protein]]
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[[Category: P3 major capsid protein]]
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[[Category: P30 tape measure]]
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[[Category: P31 penton protein]]
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[[Category: Virus]]
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[[Category: Virus/viral protein]]
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Current revision

Structural analysis of PRD1

1w8x, resolution 4.20Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

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