7erc
From Proteopedia
(Difference between revisions)
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==Crystal structure of human Biliverdin IX-beta reductase B with Deferasirox (ICL)== | ==Crystal structure of human Biliverdin IX-beta reductase B with Deferasirox (ICL)== | ||
- | <StructureSection load='7erc' size='340' side='right'caption='[[7erc]]' scene=''> | + | <StructureSection load='7erc' size='340' side='right'caption='[[7erc]], [[Resolution|resolution]] 1.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ERC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ERC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7erc]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ERC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ERC FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7erc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7erc OCA], [https://pdbe.org/7erc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7erc RCSB], [https://www.ebi.ac.uk/pdbsum/7erc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7erc ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JBL:4-[3,5-bis(2-hydroxyphenyl)-1,2,4-triazol-1-yl]benzoic+acid'>JBL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7erc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7erc OCA], [https://pdbe.org/7erc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7erc RCSB], [https://www.ebi.ac.uk/pdbsum/7erc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7erc ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[https://www.uniprot.org/uniprot/BLVRB_HUMAN BLVRB_HUMAN]] Broad specificity oxidoreductase that catalyzes the NADPH-dependent reduction of a variety of flavins, such as riboflavin, FAD or FMN, biliverdins, methemoglobin and PQQ (pyrroloquinoline quinone). Contributes to heme catabolism and metabolizes linear tetrapyrroles. Can also reduce the complexed Fe(3+) iron to Fe(2+) in the presence of FMN and NADPH. In the liver, converts biliverdin to bilirubin.<ref>PMID:10620517</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Biliverdin IXbeta reductase B (BLVRB) has recently been proposed as a novel therapeutic target for thrombocytopenia through its reactive oxygen species (ROS)-associated mechanism. Thus, we aim at repurposing drugs as new inhibitors of BLVRB. Based on IC50 (<5 muM), we have identified 20 compounds out of 1496 compounds from the Food and Drug Administration (FDA)-approved library and have clearly mapped their binding sites to the active site. Furthermore, we show the detailed BLVRB-binding modes and thermodynamic properties (DeltaH, DeltaS, and KD) with nuclear magnetic resonance (NMR) and isothermal titration calorimetry together with complex structures of eight water-soluble compounds. We anticipate that the results will serve as a novel platform for further in-depth studies on BLVRB effects for related functions such as ROS accumulation and megakaryocyte differentiation, and ultimately treatments of platelet disorders. | ||
+ | |||
+ | Repositioning Food and Drug Administration-Approved Drugs for Inhibiting Biliverdin IXbeta Reductase B as a Novel Thrombocytopenia Therapeutic Target.,Kim M, Ha JH, Choi J, Kim BR, Gapsys V, Lee KO, Jee JG, Chakrabarti KS, de Groot BL, Griesinger C, Ryu KS, Lee D J Med Chem. 2021 Dec 27. doi: 10.1021/acs.jmedchem.1c01664. PMID:34957824<ref>PMID:34957824</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7erc" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Griesinger C]] | + | [[Category: Griesinger, C]] |
- | [[Category: Ha | + | [[Category: Ha, J H]] |
- | [[Category: Kim M]] | + | [[Category: Kim, M]] |
- | [[Category: Lee D]] | + | [[Category: Lee, D]] |
- | [[Category: Ryu | + | [[Category: Ryu, K S]] |
+ | [[Category: Biliverdin reductase b]] | ||
+ | [[Category: Blvrb]] | ||
+ | [[Category: Deferasirox]] | ||
+ | [[Category: Inhibitor]] | ||
+ | [[Category: Nadp]] | ||
+ | [[Category: Oxidoreductase]] | ||
+ | [[Category: Platelet]] |
Revision as of 08:37, 23 February 2022
Crystal structure of human Biliverdin IX-beta reductase B with Deferasirox (ICL)
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Categories: Large Structures | Griesinger, C | Ha, J H | Kim, M | Lee, D | Ryu, K S | Biliverdin reductase b | Blvrb | Deferasirox | Inhibitor | Nadp | Oxidoreductase | Platelet