This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2j1k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:31, 13 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2j1k' size='340' side='right'caption='[[2j1k]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='2j1k' size='340' side='right'caption='[[2j1k]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2j1k]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Adec2 Adec2] and [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J1K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J1K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2j1k]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Canine_adenovirus_2 Canine adenovirus 2] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J1K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J1K FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kac|1kac]], [[1nob|1nob]], [[1p69|1p69]], [[1p6a|1p6a]]</div></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j1k OCA], [https://pdbe.org/2j1k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j1k RCSB], [https://www.ebi.ac.uk/pdbsum/2j1k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j1k ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j1k OCA], [https://pdbe.org/2j1k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j1k RCSB], [https://www.ebi.ac.uk/pdbsum/2j1k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j1k ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SPIKE_ADECT SPIKE_ADECT] Forms spikes that protrude from each vertex of the icosahedral capsid. Interacts with host receptor to provide virion initial attachment to target cell. Fiber proteins are shed during virus entry, when virus is still at the cell surface (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 30: Line 32:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adec2]]
+
[[Category: Canine adenovirus 2]]
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Billet, O]]
+
[[Category: Billet O]]
-
[[Category: Cusack, S]]
+
[[Category: Cusack S]]
-
[[Category: Kremer, E J]]
+
[[Category: Kremer EJ]]
-
[[Category: Lortat-Jacob, H]]
+
[[Category: Lortat-Jacob H]]
-
[[Category: Seiradake, E]]
+
[[Category: Seiradake E]]
-
[[Category: Adenovirus]]
+
-
[[Category: Canine]]
+
-
[[Category: Car]]
+
-
[[Category: Cav-2]]
+
-
[[Category: Cell adhesion]]
+
-
[[Category: Complex]]
+
-
[[Category: Coxsackievirus]]
+
-
[[Category: Domain d1]]
+
-
[[Category: Fiber]]
+
-
[[Category: Fiber head]]
+
-
[[Category: Fiber protein]]
+
-
[[Category: Fibre]]
+
-
[[Category: Fibre head]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Host-virus interaction]]
+
-
[[Category: Immunoglobulin domain]]
+
-
[[Category: Knob]]
+
-
[[Category: Lipoprotein]]
+
-
[[Category: Membrane]]
+
-
[[Category: Palmitate]]
+
-
[[Category: Phosphorylation]]
+
-
[[Category: Receptor]]
+
-
[[Category: Tight junction]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Virus-receptor complex]]
+

Current revision

CAV-2 fibre head in complex with CAR D1

PDB ID 2j1k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2j1k"
Personal tools