7ow8
From Proteopedia
(Difference between revisions)
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<StructureSection load='7ow8' size='340' side='right'caption='[[7ow8]], [[Resolution|resolution]] 3.50Å' scene=''> | <StructureSection load='7ow8' size='340' side='right'caption='[[7ow8]], [[Resolution|resolution]] 3.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'> | + | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OW8 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.5Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ow8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ow8 OCA], [https://pdbe.org/7ow8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ow8 RCSB], [https://www.ebi.ac.uk/pdbsum/7ow8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ow8 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ow8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ow8 OCA], [https://pdbe.org/7ow8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ow8 RCSB], [https://www.ebi.ac.uk/pdbsum/7ow8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ow8 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | == Function == | ||
| - | [[https://www.uniprot.org/uniprot/BMRA_BACSU BMRA_BACSU]] An efflux transporter able to transport Hoechst 33342, ethidium bromide, doxorubicin and a number of other drugs in vitro into inside out vesicles. The endogenous substrate is unknown. It has been suggested that NBD dimerization induced by ATP-binding causes a large conformational change responsible for substrate translocation (PubMed:18215075). Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (Probable).<ref>PMID:18215075</ref> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Multidrug ABC transporters translocate drugs across membranes by a mechanism for which the molecular features of drug release are so far unknown. Here, we resolved three ATP-Mg(2+)-bound outward-facing conformations of the Bacillus subtilis (homodimeric) BmrA by x-ray crystallography and single-particle cryo-electron microscopy (EM) in detergent solution, one of them with rhodamine 6G (R6G), a substrate exported by BmrA when overexpressed in B. subtilis. Two R6G molecules bind to the drug-binding cavity at the level of the outer leaflet, between transmembrane (TM) helices 1-2 of one monomer and TM5'-6' of the other. They induce a rearrangement of TM1-2, highlighting a local flexibility that we confirmed by hydrogen/deuterium exchange and molecular dynamics simulations. In the absence of R6G, simulations show a fast postrelease occlusion of the cavity driven by hydrophobicity, while when present, R6G can move within the cavity, maintaining it open. | ||
| - | + | ==See Also== | |
| - | + | *[[ABC transporter 3D structures|ABC transporter 3D structures]] | |
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Chaptal | + | [[Category: Chaptal V]] |
| - | [[Category: Falson | + | [[Category: Falson P]] |
| - | [[Category: Gobet | + | [[Category: Gobet A]] |
| - | [[Category: Schoehn | + | [[Category: Schoehn G]] |
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Current revision
CryoEM structure of the ABC transporter BmrA E504A mutant in complex with ATP-Mg
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