This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3d3z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:40, 30 August 2023) (edit) (undo)
 
Line 4: Line 4:
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3d3z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3Z FirstGlance]. <br>
<table><tr><td colspan='2'>[[3d3z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3Z FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D3Z:1-(5-DEOXY-BETA-L-XYLOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE'>D3Z</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ribonuclease_T(2) Ribonuclease T(2)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.1 3.1.27.1] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D3Z:1-(5-DEOXY-BETA-L-XYLOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE'>D3Z</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3z OCA], [https://pdbe.org/3d3z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3z RCSB], [https://www.ebi.ac.uk/pdbsum/3d3z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3z ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3z OCA], [https://pdbe.org/3d3z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3z RCSB], [https://www.ebi.ac.uk/pdbsum/3d3z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3z ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q45U61_ASPNG Q45U61_ASPNG]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 22: Line 24:
[[Category: Aspergillus niger]]
[[Category: Aspergillus niger]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Almog, O]]
+
[[Category: Almog O]]
-
[[Category: Gonzalez, A]]
+
[[Category: Gonzalez A]]
-
[[Category: Hydrolase]]
+
-
[[Category: Rnase]]
+
-
[[Category: T2]]
+

Current revision

Crystal structure of Actibind a T2 RNase

PDB ID 3d3z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools