This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dka

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:33, 1 February 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3dka' size='340' side='right'caption='[[3dka]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='3dka' size='340' side='right'caption='[[3dka]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dka]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dka]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NP_389123.1, yjoA, BSU12410 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dka OCA], [https://pdbe.org/3dka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dka RCSB], [https://www.ebi.ac.uk/pdbsum/3dka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dka ProSAT], [https://www.topsan.org/Proteins/JCSG/3dka TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dka OCA], [https://pdbe.org/3dka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dka RCSB], [https://www.ebi.ac.uk/pdbsum/3dka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dka ProSAT], [https://www.topsan.org/Proteins/JCSG/3dka TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/YJOA_BACSU YJOA_BACSU]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 21: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Vibrio subtilis ehrenberg 1835]]
+
[[Category: Bacillus subtilis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
 
-
[[Category: Dinb/yfit-like putative metalloenzyme fold]]
 
-
[[Category: Jcsg]]
 
-
[[Category: PSI, Protein structure initiative]]
 
-
[[Category: Unknown function]]
 

Current revision

Crystal structure of a dinb-like protein (yjoa, bsu12410) from bacillus subtilis at 2.30 A resolution

PDB ID 3dka

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools