This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Ribonucleotide reductase 3D structures
From Proteopedia
(Difference between revisions)
| Line 62: | Line 62: | ||
**[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br /> | **[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br /> | ||
**[[6gp2]], [[6gp3]] - RNR R2 – ''Mesoplasma florum''<br /> | **[[6gp2]], [[6gp3]] - RNR R2 – ''Mesoplasma florum''<br /> | ||
| - | **[[7aik]], [[7ail]] - AaRNR R2 <br /> | + | **[[7aik]], [[7ail]], [[7q39]], [[7q3c]] - AaRNR R2 <br /> |
**[[6y2n]] - RNR R2 – ''Saccharopolyspora erythraea''<br /> | **[[6y2n]] - RNR R2 – ''Saccharopolyspora erythraea''<br /> | ||
**[[6ebz]], [[6ebz]] - AuRNR R2 – ''Aerococcus urinae''<br /> | **[[6ebz]], [[6ebz]] - AuRNR R2 – ''Aerococcus urinae''<br /> | ||
| Line 101: | Line 101: | ||
**[[7mdi]] - RNR R1 + R2 + CDP + DTP – ''Neisseria gonorrhoea'' - Cryo EM<br /> | **[[7mdi]] - RNR R1 + R2 + CDP + DTP – ''Neisseria gonorrhoea'' - Cryo EM<br /> | ||
| - | *'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit; NrdI | + | *'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit; NrdI – FMN containing flavoprotein |
**[[6cgm]] - BaRNR NrdE – ''Bacillus subtilis''<br /> | **[[6cgm]] - BaRNR NrdE – ''Bacillus subtilis''<br /> | ||
| Line 121: | Line 121: | ||
**[[4bmu]] - BcRNR NrdF + Mn<br /> | **[[4bmu]] - BcRNR NrdF + Mn<br /> | ||
**[[4bmo]], [[4bmp]] - BcRNR NrdF + NrdI + Fe + FMN<br /> | **[[4bmo]], [[4bmp]] - BcRNR NrdF + NrdI + Fe + FMN<br /> | ||
| + | **[[7z3d]], [[7z3e]] - BcRNR NrdF + NrdI + Mn + FMN<br /> | ||
**[[4m1f]] - EcRNR NrdF<br /> | **[[4m1f]] - EcRNR NrdF<br /> | ||
**[[3n37]] - EcRNR NrdF + Mn<br /> | **[[3n37]] - EcRNR NrdF + Mn<br /> | ||
| Line 130: | Line 131: | ||
**[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br /> | **[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br /> | ||
**[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br /> | **[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br /> | ||
| - | **[[6ebq]] - AuRNR NrdI + FMN<br /> | ||
| - | *Class Id RNR; NrdB – small subunit | + | *Class Id RNR or ribonucleotide-diphosphate reductase; NrdB – small subunit |
**[[6sf4]], [[6sf5]] - RNR β subunit – ''Leeuwenhoekiella blandensis''<br /> | **[[6sf4]], [[6sf5]] - RNR β subunit – ''Leeuwenhoekiella blandensis''<br /> | ||
| - | **[[6dqw]] - FjRNR | + | **[[6cwo]], [[6cwq]] - FjRNR b subunit 1-324 + Mn – ''Flavobacterium johnsoniae''<br /> |
| - | **[[6dqx]] - RNR | + | **[[8dq4]], [[8dq5]] - FjRNR b subunit (mutant) + Mn <br /> |
| + | **[[6dqw]] - FjRNR a subunit 1-565<br /> | ||
| + | **[[6dqx]] - RNR a subunit – ''Actinobacillus ureae''<br /> | ||
| + | **[[8dq3]] - RNR b subunit + Mn – ''Aggregatibacter actinomycetemcomitans''<br /> | ||
| + | |||
| + | *Class Ie RNR | ||
| + | |||
| + | **[[6ebo]] - AuRNR beta subunit - ''Aerococcus urinae'' <br /> | ||
| + | **[[7mms]], [[7mmt]], [[7mmu]], [[7mmv]], [[7mmw]] - AuRNR beta subunit + Cu<br /> | ||
| + | **[[6ebp]] - AuRNR beta subunit + L-Dopa<br /> | ||
| + | **[[6ebz]] - AuRNR beta subunit + L-Dopa + SCN<br /> | ||
| + | **[[6ebq]] - AuRNR NrdI + FMN<br /> | ||
| + | **[[7mmp]], [[7mmq]] - AuRNR + NrdI + FMN<br /> | ||
| + | **[[7mmr]] - AuRNR + NrdI + FMN + Cu<br /> | ||
| + | **[[6dqx]] - RNR α subunit – ''Actinobacillu | ||
| + | s ureae''<br /> | ||
*'''Class II ribonucleotide reductase''' | *'''Class II ribonucleotide reductase''' | ||
| Line 159: | Line 174: | ||
**[[7b9p]], [[7b9q]] – RNR + DTP – ''Rhodobacter sphaeroides'' <br /> | **[[7b9p]], [[7b9q]] – RNR + DTP – ''Rhodobacter sphaeroides'' <br /> | ||
| + | |||
| + | *Anaerobic ribonucleotide-triphosphate reductase | ||
| + | |||
| + | **[[8p23]], [[8p27]], [[8p28]], [[8p2c]], [[8p2d]], [[8p2s]], [[8p39]] – ARNR + DTP – ''Segatella copri'' - Cryo EM<br /> | ||
| + | |||
| + | *RNR | ||
| + | |||
| + | **[[7urg]] – RNR + TTP – ''Synechococcus'' phage – Cryo EM <br /> | ||
| + | |||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:57, 18 October 2023
3D Structures of Ribonucleotide reductase
Updated on 18-October-2023
s ureae
