7eau

From Proteopedia

(Difference between revisions)

Revision as of 11:12, 14 June 2023

SIB1, an effector of Colletotrichum orbiculare

Structural highlights

7eau is a 1 chain structure with sequence from Colletotrichum orbiculare MAFF 240422. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

N4VVN8_COLOR

Publication Abstract from PubMed

Fungal plant pathogens secrete virulence-related proteins, called effectors, to establish host infection; however, the details are not fully understood yet. Functional screening of effector candidates using Agrobacterium-mediated transient expression assay in Nicotiana benthamiana identified two virulence-related effectors, named SIB1 and SIB2 (Suppression of Immunity in N. benthamiana), of an anthracnose fungus Colletotrichum orbiculare, which infects both cucurbits and N. benthamiana. The Agrobacterium-mediated transient expression of SIB1 or SIB2 increased the susceptibility of N. benthamiana to C. orbiculare, which suggested these effectors can suppress immune responses in N. benthamiana. The presence of SIB1 and SIB2 homologs was found to be limited to the genus Colletotrichum. SIB1 suppressed both (i) the generation of reactive oxygen species triggered by two different pathogen-associated molecular patterns, chitin and flg22, and (ii) the cell death response triggered by the Phytophthora infestans INF1 elicitin in N. benthamiana. We determined the NMR-based structure of SIB1 to obtain its structural insights. The three-dimensional structure of SIB1 comprises five beta-strands, each containing three disulfide bonds. The overall conformation was found to be a cylindrical shape, such as the well-known antiparallel beta-barrel structure. However, the beta-strands were found to display a unique topology, one pair of these beta-strands formed a parallel beta-sheet. These results suggest that the effector SIB1 present in Colletotrichum fungi has unique structural features and can suppress pathogen-associated molecular pattern-triggered immunity in N. benthamiana.

Fungal effector SIB1 of Colletotrichum orbiculare has unique structural features and can suppress plant immunity in Nicotiana benthamiana.,Zhang R, Isozumi N, Mori M, Okuta R, Singkaravanit-Ogawa S, Imamura T, Kurita JI, Gan P, Shirasu K, Ohki S, Takano Y J Biol Chem. 2021 Dec;297(6):101370. doi: 10.1016/j.jbc.2021.101370. Epub 2021, Oct 29. PMID:34756891^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Zhang R, Isozumi N, Mori M, Okuta R, Singkaravanit-Ogawa S, Imamura T, Kurita JI, Gan P, Shirasu K, Ohki S, Takano Y. Fungal effector SIB1 of Colletotrichum orbiculare has unique structural features and can suppress plant immunity in Nicotiana benthamiana. J Biol Chem. 2021 Dec;297(6):101370. doi: 10.1016/j.jbc.2021.101370. Epub 2021, Oct 29. PMID:34756891 doi:http://dx.doi.org/10.1016/j.jbc.2021.101370

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/7eau"

Categories: Colletotrichum orbiculare MAFF 240422 | Large Structures | Kurita J | Mori M | Ohki S

@@ Line 1: / Line 1: @@
 ==SIB1, an effector of Colletotrichum orbiculare==
-<StructureSection load='7eau' size='340' side='right'caption='[[7eau]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+<StructureSection load='7eau' size='340' side='right'caption='[[7eau]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[7eau]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EAU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EAU FirstGlance]. <br>
+<table><tr><td colspan='2'>[[7eau]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Colletotrichum_orbiculare_MAFF_240422 Colletotrichum orbiculare MAFF 240422]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EAU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EAU FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eau OCA], [https://pdbe.org/7eau PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eau RCSB], [https://www.ebi.ac.uk/pdbsum/7eau PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eau ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/N4VVN8_COLOR N4VVN8_COLOR]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 22: @@
 __TOC__
 </StructureSection>
+[[Category: Colletotrichum orbiculare MAFF 240422]]
 [[Category: Large Structures]]
-[[Category: Kurita, J]]
+[[Category: Kurita J]]
-[[Category: Mori, M]]
+[[Category: Mori M]]
-[[Category: Ohki, S]]
+[[Category: Ohki S]]
-[[Category: Structure from xplor-nih]]
-[[Category: Toxin]]

7eau

From Proteopedia

Revision as of 11:12, 14 June 2023

SIB1, an effector of Colletotrichum orbiculare

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox