1pqn
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==dominant negative human hDim1 (hDim1 1-128)== | ==dominant negative human hDim1 (hDim1 1-128)== | ||
- | <StructureSection load='1pqn' size='340' side='right'caption='[[1pqn | + | <StructureSection load='1pqn' size='340' side='right'caption='[[1pqn]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1pqn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1pqn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PQN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PQN FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | + | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pqn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pqn OCA], [https://pdbe.org/1pqn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pqn RCSB], [https://www.ebi.ac.uk/pdbsum/1pqn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pqn ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pqn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pqn OCA], [https://pdbe.org/1pqn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pqn RCSB], [https://www.ebi.ac.uk/pdbsum/1pqn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pqn ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/TXN4A_HUMAN TXN4A_HUMAN] Essential role in pre-mRNA splicing. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Line 20: | Line 19: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pqn ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pqn ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The 142 amino acid Dim1p protein is a component of the U4/U6.U5 tri-snRNP complex required for pre-mRNA splicing and interacts with multiple splicing-associated proteins. To gain further insight into the structural basis of its function, we determined the solution structure of the reduced form of the dominant negative human hDim1 (hDim1(1)(-)(128)) using multidimensional NMR spectroscopy. This dominant negative hDim1 assumes a thioredoxin-like fold, confirming previous NMR and crystallographic results. However, in contrast to a recent crystal structure, the NMR solution structure for the reduced form of hDim1(1)(-)(128) presented here, along with thermodynamic data, indicates that the presence of a disulfide bond between Cys38 and Cys79 is structurally and functionally unimportant. Comparison of the truncated hDim1(1)(-)(128) with the full-length protein, using NMR and circular dichroism spectroscopy, indicates that the 14 C-terminal residues can undergo a local unfolding transition and assume alternative conformations, which appear to play a functional role. Other residues essential for hDim1 function are identified by using mutational and genetic approaches. The residues thus identified are not identical with those previously shown to govern Dim1 interaction with defined protein partners. | ||
- | |||
- | Structure, stability, and function of hDim1 investigated by NMR, circular dichroism, and mutational analysis.,Zhang YZ, Cheng H, Gould KL, Golemis EA, Roder H Biochemistry. 2003 Aug 19;42(32):9609-18. PMID:12911302<ref>PMID:12911302</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1pqn" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[U5-15kD|U5-15kD]] | *[[U5-15kD|U5-15kD]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Cheng | + | [[Category: Cheng H]] |
- | [[Category: Golemis | + | [[Category: Golemis EA]] |
- | [[Category: Gould | + | [[Category: Gould KL]] |
- | [[Category: Roder | + | [[Category: Roder H]] |
- | [[Category: Zhang | + | [[Category: Zhang YZ]] |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + |
Revision as of 05:58, 17 April 2024
dominant negative human hDim1 (hDim1 1-128)
|
Categories: Homo sapiens | Large Structures | Cheng H | Golemis EA | Gould KL | Roder H | Zhang YZ