7mbw

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Current revision (13:43, 6 November 2024) (edit) (undo)
 
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<StructureSection load='7mbw' size='340' side='right'caption='[[7mbw]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
<StructureSection load='7mbw' size='340' side='right'caption='[[7mbw]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7mbw]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MBW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MBW FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MBW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MBW FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mbw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mbw OCA], [https://pdbe.org/7mbw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mbw RCSB], [https://www.ebi.ac.uk/pdbsum/7mbw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mbw ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mbw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mbw OCA], [https://pdbe.org/7mbw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mbw RCSB], [https://www.ebi.ac.uk/pdbsum/7mbw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mbw ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
 
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[[https://www.uniprot.org/uniprot/TNSC_ECOLX TNSC_ECOLX]] TnsC binds non-specifically to DNA in the presence of ATP. It is required for Tn7 transposition. TnsABC + TnsD promote high-frequency insertion of Tn7 into a specific target site known as att-Tn7 whereas TnsABC + TnsE promote low-frequency insertion into many different sites.
 
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Tn7 transposable elements are unique for their highly specific, and sometimes programmable, target-site selection mechanisms and precise insertions. All the elements in the Tn7 family utilize an AAA+ adaptor (TnsC) to coordinate target-site selection with transpososome assembly and to prevent insertions at sites already containing a Tn7 element. Owing to its multiple functions, TnsC is considered the linchpin in the Tn7 element. Here we present the high-resolution cryo-EM structure of TnsC bound to DNA using a gain-of-function variant of the protein and a DNA substrate that together recapitulate the recruitment to a specific DNA target site. TnsC forms an asymmetric ring on target DNA that segregates target-site selection and interaction with the paired-end complex to opposite faces of the ring. Unlike most AAA+ ATPases, TnsC uses a DNA distortion to find the target site but does not remodel DNA to activate transposition. By recognizing pre-distorted substrates, TnsC creates a built-in regulatory mechanism where ATP hydrolysis abolishes ring formation proximal to an existing element. This work unveils how Tn7 and Tn7-like elements determine the strict spacing between the target and integration sites.
 
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Structural basis for DNA targeting by the Tn7 transposon.,Shen Y, Gomez-Blanco J, Petassi MT, Peters JE, Ortega J, Guarne A Nat Struct Mol Biol. 2022 Feb;29(2):143-151. doi: 10.1038/s41594-022-00724-8., Epub 2022 Feb 16. PMID:35173349<ref>PMID:35173349</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 7mbw" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Guarne, A]]
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[[Category: Guarne A]]
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[[Category: Shen, Y]]
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[[Category: Shen Y]]
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[[Category: Aaa+ atpase]]
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[[Category: Dna binding]]
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[[Category: Dna binding protein]]
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[[Category: Transposition]]
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Current revision

Crystal structure of TnsC(1-503)A225V

PDB ID 7mbw

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