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RNA polymerase 3D structures
From Proteopedia
(Difference between revisions)
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**[[6lts]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | **[[6lts]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | ||
| + | **[[7mlb]], [[7mli]], [[7mlj]], [[7rdq]] - TtRNAP in elongation complex + σ factor SIGA – Cryo EM<br /> | ||
**[[4oin]], [[4oio]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA<br /> | **[[4oin]], [[4oio]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA<br /> | ||
**[[4oip]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + nucleotide<br /> | **[[4oip]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + nucleotide<br /> | ||
**[[4oiq]], [[4oir]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + antibiotic<br /> | **[[4oiq]], [[4oir]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + antibiotic<br /> | ||
**[[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[5d4d]], [[5d4e]], [[5voi]], [[6p70]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | **[[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[5d4d]], [[5d4e]], [[5voi]], [[6p70]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | ||
| - | **[[4q5s]], [[5d4c]], [[5e17]], [[5e18]], [[5vo8]], [[6p71]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]], [[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]] - TtRNAP | + | **[[4q5s]], [[5d4c]], [[5e17]], [[5e18]], [[5vo8]], [[6p71]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]], [[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]] - TtRNAP in elongation complex<br /> |
**[[5i2d]] - TtRNAP subunits α,β,β’,ω + σ factor + transcriptional regulator + DNA + RNA<br /> | **[[5i2d]] - TtRNAP subunits α,β,β’,ω + σ factor + transcriptional regulator + DNA + RNA<br /> | ||
**[[6cuu]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | **[[6cuu]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | ||
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**[[6n61]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + capistruin peptide<br /> | **[[6n61]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + capistruin peptide<br /> | ||
**[[6n60]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + microcin peptide<br /> | **[[6n60]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + microcin peptide<br /> | ||
| - | **[[5nsr]], [[5nss]], [[6gh6]], [[6gh5]], [[6ca0]], [[6omf]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA – Cryo EM<br /> | + | **[[5nsr]], [[5nss]], [[6gh6]], [[6gh5]], [[6ca0]], [[6omf]], [[7mkd]], [[7mke]], [[7mki]], [[7mkj]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA – Cryo EM<br /> |
**[[5vt0]] - EcRNAP subunits α,β,β’,ω + σ factor + RNA – Cryo EM<br /> | **[[5vt0]] - EcRNAP subunits α,β,β’,ω + σ factor + RNA – Cryo EM<br /> | ||
**[[4yln]], [[4ylo]], [[4ylp]], [[5ipl]], [[5ipm]], [[5ipn]], [[6gfw]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | **[[4yln]], [[4ylo]], [[4ylp]], [[5ipl]], [[5ipm]], [[5ipn]], [[6gfw]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | ||
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**[[4s20]] - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA<br /> | **[[4s20]] - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA<br /> | ||
**[[5ms0]] - EcRNAP subunits α,β,β’,ω + σ factor + NusB + NusG + NusA + antitermination protein + RS10 + DNA – Cryo EM<br /> | **[[5ms0]] - EcRNAP subunits α,β,β’,ω + σ factor + NusB + NusG + NusA + antitermination protein + RS10 + DNA – Cryo EM<br /> | ||
| - | **[[5uha]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA <br /> | + | **[[5uha]], [[6vw0]], [[7rwi]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA <br /> |
**[[5uh9]], [[5uh8]], [[6jcy]], [[6jcx]], [[6jbq]], [[6kon]], [[6koo]], [[6kop]], [[6koq]], [[6tye]], [[6tyf]], [[6tyg]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA <br /> | **[[5uh9]], [[5uh8]], [[6jcy]], [[6jcx]], [[6jbq]], [[6kon]], [[6koo]], [[6kop]], [[6koq]], [[6tye]], [[6tyf]], [[6tyg]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA <br /> | ||
**[[5uhg]], [[5uhc]], [[5uh6]], [[5uh5]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + antibiotic<br /> | **[[5uhg]], [[5uhc]], [[5uh6]], [[5uh5]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + antibiotic<br /> | ||
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**[[3aoh]], [[3aoi]] - TtRNAP subunits α,β,β’,ω + DNA + RNA + GFH1<br /> | **[[3aoh]], [[3aoi]] - TtRNAP subunits α,β,β’,ω + DNA + RNA + GFH1<br /> | ||
| - | **[[6wox]], [[6woy]] - TtRNAP subunits α,β,β’,ω in transcription complex<br /> | + | **[[6wox]], [[6woy]], [[7eh0]], [[7eh1]], [[7eh2]] - TtRNAP subunits α,β,β’,ω in transcription complex<br /> |
**[[6m6a]], [[6m6b]] - TtRNAP subunits α,β,β’,ω + transcription-repair-coupling factor + DNA – Cryo EM<br /> | **[[6m6a]], [[6m6b]] - TtRNAP subunits α,β,β’,ω + transcription-repair-coupling factor + DNA – Cryo EM<br /> | ||
**[[3t72]] - EcRNAP subunit β + Pho box DNA + PhoB<br /> | **[[3t72]] - EcRNAP subunit β + Pho box DNA + PhoB<br /> | ||
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**[[3n97]] - EcRNAP subunit α C terminal + DNA + σ factor<br /> | **[[3n97]] - EcRNAP subunit α C terminal + DNA + σ factor<br /> | ||
**[[6c6u]] - EcRNAP subunits α,β,β’,ω + NusG + DNA – Cryo EM<br /> | **[[6c6u]] - EcRNAP subunits α,β,β’,ω + NusG + DNA – Cryo EM<br /> | ||
| + | **[[6z9p]], [[6z9q]], [[6z9r]], [[6z9s]], [[6z9t]], [[7add]], [[7ade]] - EcRNAP in termination transcription complex<br /> | ||
| + | **[[6vyu]] - EcRNAP in transcription initiation complex + mRNA<br /> | ||
| + | **[[6vu3]], [[6vz3]] - EcRNAP transcription translation complex + mRNA – Cryo EM<br /> | ||
| + | **[[6vzj]] - EcRNAP transcription translation complex + mRNA + tRNA – Cryo EM<br /> | ||
| + | **[[6vyz]] - EcRNAP transcription translation complex + NusA + mRNA + tRNA – Cryo EM<br /> | ||
| + | **[[6vyq]], [[6vyr]], [[6vys]], [[6vyt]], [[6vyw]], [[6vyx]], [[6vyy]], [[6vz2]], [[6vz5]], [[6vz7]], [[6xdr]], [[6xgf]], [[6xij]], [[6xii]] - EcRNAP transcription translation complex + NusG + mRNA + tRNA – Cryo EM<br /> | ||
| + | **[[6x6t]], [[6x7f]], [[6x7k]], [[6x9q]], [[6xdq]] - EcRNAP transcription translation complex + NusA + NusG + mRNA + tRNA – Cryo EM<br /> | ||
**[[6c6t]], [[6c6s]] - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM<br /> | **[[6c6t]], [[6c6s]] - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM<br /> | ||
**[[6gov]] - EcRNAP subunits α,β,β’,ω + NusB + antitermination protein + RS10 + DNA – Cryo EM<br /> | **[[6gov]] - EcRNAP subunits α,β,β’,ω + NusB + antitermination protein + RS10 + DNA – Cryo EM<br /> | ||
**[[6flq]] - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM<br /> | **[[6flq]] - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM<br /> | ||
| + | **[[6xas]] - EcRNAP subunits α,β,β’,ω + NusA + helicase rho + DNA + RNA – Cryo EM<br /> | ||
| + | **[[6xav]], [[7adb]], [[7adc]] - EcRNAP subunits α,β,β’,ω + NusG + helicase rho + DNA + RNA – Cryo EM<br /> | ||
**[[6alg]] - EcRNAP subunits α,β,β’,ω + NUN + DNA + RNA – Cryo EM<br /> | **[[6alg]] - EcRNAP subunits α,β,β’,ω + NUN + DNA + RNA – Cryo EM<br /> | ||
**[[6p19]] - EcRNAP subunits α,β,β’,ω + protein Q + DNA + RNA – Cryo EM<br /> | **[[6p19]] - EcRNAP subunits α,β,β’,ω + protein Q + DNA + RNA – Cryo EM<br /> | ||
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**[[6p18]] - EcRNAP subunits α,β,β’,ω + protein Q + σ factor + DNA + RNA – Cryo EM<br /> | **[[6p18]] - EcRNAP subunits α,β,β’,ω + protein Q + σ factor + DNA + RNA – Cryo EM<br /> | ||
**[[6kj6]] - EcRNAP subunits α,β,β’,ω + RPOS + σ factor-binding protein CRL + DNA + RNA – Cryo EM<br /> | **[[6kj6]] - EcRNAP subunits α,β,β’,ω + RPOS + σ factor-binding protein CRL + DNA + RNA – Cryo EM<br /> | ||
| + | **[[7chw]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + DNA – Cryo EM<br /> | ||
| + | **[[6x26]], [[6x2f]], [[6x2n]], [[6x43]], [[6x4w]], [[6x4y]], [[6x50]] - EcRNAP in elongation complex + TRCF – Cryo EM<br /> | ||
| + | **[[7khb]], [[7khc]], [[7khe]], [[7khi]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + DNAK suppressor protein + DNA – Cryo EM<br /> | ||
| + | **[[7bef]], [[7beg]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + RAMA + DNA – Cryo EM<br /> | ||
| + | **[[6xh7]], [[7c17]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + CueR + DNA – Cryo EM<br /> | ||
| + | **[[6xh8]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + CueR + DNA + RNA – Cryo EM<br /> | ||
| + | **[[6xl5]], [[6xl9]], [[6xlj]], [[6xll]], [[6xlm]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + DNA + RNA – Cryo EM<br /> | ||
| + | **[[6wmu]], [[7c97]], [[7dy6]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + starvation protein + DNA - Cryo EM<br /> | ||
| + | **[[7d7c]] - EcRNAP subunits α,β,β’,ω + GP55 + DNA - Cryo EM<br /> | ||
| + | **[[7d7d]] - EcRNAP subunits α,β,β’,ω + DNAP clamp + GP55 + DNA - Cryo EM<br /> | ||
**[[6n4c]], [[6oul]], [[7khc]], [[7khb]] - EcRNAP subunits α,β,β’,ω + RPOD + DNA – Cryo EM<br /> | **[[6n4c]], [[6oul]], [[7khc]], [[7khb]] - EcRNAP subunits α,β,β’,ω + RPOD + DNA – Cryo EM<br /> | ||
**[[6ldi]] - EcRNAP subunits α,β,β’,ω + RPOD + CUER + DNA + RNA – Cryo EM<br /> | **[[6ldi]] - EcRNAP subunits α,β,β’,ω + RPOD + CUER + DNA + RNA – Cryo EM<br /> | ||
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**[[6dve]], [[6dvd]], [[6dvc]], [[6dvb]], [[6dv9]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | **[[6dve]], [[6dvd]], [[6dvc]], [[6dvb]], [[6dv9]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | ||
**[[5zx2]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | **[[5zx2]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | ||
| + | **[[7kin]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RBPA – Cryo EM<br /> | ||
| + | **[[7kif]], [[7kim]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RBPA + CARD + Whib7 – Cryo EM<br /> | ||
| + | **[[6wmp]] - FtRNAP subunits α,β,β’,ω + RNA + DNA – Francisella tularensis - Cryo EM<br /> | ||
| + | **[[6wmr]], [[6wmt]] - FtRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + starvation protein + macrophage growth locus + DNA - Cryo EM<br /> | ||
| + | **[[6wvj]] - BsRNAP in elongation complex - Cryo EM<br /> | ||
| + | **[[7ckq]] - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + multidrug regulator + YkzG + DNA - Cryo EM<br /> | ||
| + | **[[7f75]] - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + regulator Spx + RNA + DNA - Cryo EM<br /> | ||
*''Prokaryotic DNA-dependent RNAP complex with small molecule'' | *''Prokaryotic DNA-dependent RNAP complex with small molecule'' | ||
Revision as of 10:29, 8 March 2022
Updated on 08-March-2022 - For a general description of the protein see RNA polymerase
